Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0846 ATGACGCAACGGCGGTTTCTGGAGACGGAGCTGAGCATGCCACCGTCGTACGGCAACAACACGCGCGACACGTTCATCAGCGACGCCAACTTCGATACCAACATGGTGATCATTCTGGCGGCGCTGCTGTGCGCGCTGATATGCGCGCTGGGGCTGAACTCCATCGCGCGATGCGCGCTGCGGTGCGGGCGGCGCTTCGGCGACGAGACGGCGGAGCAGGAGGCGGCGCGCCTCGCGGGGACGGGGCTGAAGCGGCGTCAGCTCAGCCGCATCCCGGTGGCGGTGTATGGTGCCTCCGGCGAGACCGTCCCGGCGACAGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGGGACAGGGTTCGAATGCTGCCCAAGTGCAACCACGGCTTCCACGTGCACTGCATTGACACGTGGCTCCTCTCCCACTCCTCCTGCCCCAACTGCCGCCACTCCCTCCTCGAGAAACCCGCCACGCCGGAGAGTGGGTCCCGCCGGAGGAGCGACGTCGTGGTGGTGGTGGAGCCGCCGAGTTGA 537 0.6704 MTQRRFLETELSMPPSYGNNTRDTFISDANFDTNMVIILAALLCALICALGLNSIARCALRCGRRFGDETAEQEAARLAGTGLKRRQLSRIPVAVYGASGETVPATECPICLGEFEKGDRVRMLPKCNHGFHVHCIDTWLLSHSSCPNCRHSLLEKPATPESGSRRRSDVVVVVEPPS* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0846 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Pvu8g0846 178 MobiDBLite consensus disorder prediction 156 178 - -
Pvu8g0846 178 CDD RING-H2_EL5_like 107 150 - -
Pvu8g0846 178 SUPERFAMILY RING/U-box 101 160 - -
Pvu8g0846 178 SMART ring_2 108 149 IPR001841 -
Pvu8g0846 178 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 162 - -
Pvu8g0846 178 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Pvu8g0846 178 SMART FANCL_C_2 104 157 - -
Pvu8g0846 178 Pfam Ring finger domain 107 150 IPR001841 -
Pvu8g0846 178 PANTHER RING-H2 FINGER PROTEIN ATL74 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0846 Pvu-Chr8 8022834 8024108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0846 5 174 C3H Transcription Factor Family AT3G10910 54.494 1.32e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0846 K19040 - gmx:100814602 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0846 8 8022834 8024108 Pvu8g0846 8 8022834 8024108 ECH