Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu8g0832 | ATGGACAACCTTGGCGTTTCTACGAGTCGTATGAAAGCAATTGAGGAGCTTCTCAGAGGCCGTGATTCTGCTAAACAACTCAGCAGTGTCATCAATGGTAGTGGTGAAAATGGGTCTTCAGCAAATCCTAAGAAACTCGTGAAGGAGGTGCTCATGTCCTTCACCAAGTCCCTCTTGCTCTTGAACAGCGACCCCACTTCTGAATCTCATGATGTCTCCAGTGTTCAAGTTTGGGACTCTCTCAAACAGGAGGACTCTCAAGAGAGCAATTGCAAGAATTCCACCGTTAAATCACGAAGAGGGTGTTACAAGAGAAGCAGAATGGAACAATTAAGAGAGATGGAGTCAGAAGCTCCAATCGATGATGGCCACCAATGGAGGAAGTATGGTCAAAAGGAGATCCTGAATGCCAAATTCCCAAGGAACTACTATAGGTGCACTCACAGAGATCAGGGTTGCTCAGCAAAAAAGCAGGTGCAAAGAGTTGAGGAGGATCCAATCCTGTACAAGACCATCTACCATGGTGACCACACCTGCAAGAGCTTGGAAAACCCTCAGATTATACTTGACCCTGTGTCTCCTTCATCTTCTTCCATGTTCCTTAGCTTTAACAGCTTGGAAAACCCTGTGTTTAACAGCTCTTTTCCTACTCCATCCAAACAAGAGTGCCCCTTTCTCTCATCTTCTTTCACTTCATCTGTCAAAAGGGAGTGCAAGGAGGAGGTTATTCCTCCCTCAACTTCCTCCAATGATTACCTCATCTCTTCTGACCTCACCTTTGATGATTCACCCAGGCATGTCACTCTATCATCATCAACACTTGACTCAGAGTACAAGGGTGTGGACATTTCAGATGTCCTCTATGATTCTGCACAACTTGATCATGTCTTTGAACCCTTCCTTCAATTTAGATAA | 915 | 0.4492 | MDNLGVSTSRMKAIEELLRGRDSAKQLSSVINGSGENGSSANPKKLVKEVLMSFTKSLLLLNSDPTSESHDVSSVQVWDSLKQEDSQESNCKNSTVKSRRGCYKRSRMEQLREMESEAPIDDGHQWRKYGQKEILNAKFPRNYYRCTHRDQGCSAKKQVQRVEEDPILYKTIYHGDHTCKSLENPQIILDPVSPSSSSMFLSFNSLENPVFNSSFPTPSKQECPFLSSSFTSSVKRECKEEVIPPSTSSNDYLISSDLTFDDSPRHVTLSSSTLDSEYKGVDISDVLYDSAQLDHVFEPFLQFR* | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu8g0832 | 304 | ProSiteProfiles | WRKY domain profile. | 115 | 177 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu8g0832 | 304 | Pfam | WRKY DNA -binding domain | 121 | 180 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu8g0832 | 304 | SMART | WRKY_cls | 120 | 181 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu8g0832 | 304 | MobiDBLite | consensus disorder prediction | 23 | 42 | - | - | |
Pvu8g0832 | 304 | Gene3D | WRKY domain | 106 | 181 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu8g0832 | 304 | MobiDBLite | consensus disorder prediction | 25 | 41 | - | - | |
Pvu8g0832 | 304 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 11 | 276 | - | - | |
Pvu8g0832 | 304 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 11 | 276 | IPR044810 | GO:0003700 | |
Pvu8g0832 | 304 | SUPERFAMILY | WRKY DNA-binding domain | 116 | 180 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu8g0832 | Pvu-Chr8 | 7871958 | 7873756 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu8g0832 | 10 | 209 | WRKY Transcription Factor Family | AT3G56400 | 35.780 | 8.63e-36 | 129 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Pvu8g0832 | WRKY | 9.2e-26 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu8g0832 | - | - | gmx:100170682 | 421.394 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu8g0832 | 8 | 7871958 | 7873756 | Pvu8g0832 | 8 | 7871958 | 7873756 | ECH | |
Pvu8g0832 | 8 | 7871958 | 7873756 | Pvu10g0599 | 10 | 9634279 | 9635768 | PCT |