Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0800 ATGGCTGCGAATTCTGGGAACATCTCATTTGCATCGTCTCAATCTGGTTCACAGGTACATGGGGATACTGATTCAGTCCATGTTGCTGTGTGTTCTCTTTGTCAAAAGTCCCTATCACATGATAATGAGATGGCAAGCGATCTTGCTATCAATGGTGTGTGTGGCGATTGTAAATTCTTGTTACTTGAAGACTTTGGGAATCATACAGTTAGCCAAGGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCATAACAGTTCTGACTCCGTGGATAATTCATCACAGCAGATCCCTCATGTGGTTAGTACCGTGAGACAATATCAATCACCTGCCTCTGGGGAGGATGATCAACTTGTAGATGGTGACACCCCTGCTTGGTCAATGCAATATGCTAGTACACACACTACCCCGAGTGGGTCTAGAAGGTGGAGGCACGTTCTCTCTGACACTGACAGTGATGGTTTTGATAATTGGAATTCTTTTTATGGTGAAAATGAATCAAGTGTGAGTTTTAGACGATACAGGGTTCCCCATGGTGAGACTGATTCTTTGTCTCACAGTGCTTATGGAGGAGACTCAGATATTTCTATGGATACTCATAGTTTTGTAGGCACTGGAGTCTTTAATTTACCAGATGAGAGAGATGAGTTCGACAGTGACACCGACATTGATCCAATGCACGCTGGCCGTGGCCAGTGGTTTTCAGATGAAGATGATGAAGAAGAGGATGAAGATGGGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGATGATGATGATGATGAAGAGGAGGTGGAGGTGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAAGCTGAAGCCACAGCCCGTCTTCAAATTTTTTTCACCTCAAGTCCAAGTGAGAGCAGGGATCACAATAATTGGGAACAGAGGTTTAATTCTACTGAATCTGAGGGAATGTTTAGCCAGATAATCAGGGATACTTGGCAAGCTTTAGAGGATGCTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTCATGAAAAATCTGCCACGTATAGTCATTGGCAAGGAACATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGGCACCTGGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTCTATCACATTGATTGCATTTTGCCATGGTTGAGTGCACGAAATTCGTGCCCTCTTTGTCGTTATGAGCTTCCAACTGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATAAATGTTATGGATGATAGTTCCTCTGATGTTTCTGATGGAGATGAGGTGAATGAAGAGAATGGTAATAGTCAAGATAGTCAAGATGAAATACAGCAGAGGGATGTAAGCACAGGTTCTACCGCAATTTCTTCTACAACAAGTGGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTATTGTGGTTAGGCAATAACTCTGAAATTGAGGGAAACAGACATCTGGGCAGTCATTACTTATCCGGGCAAAATCAACATGCCGTCCATGCTTATTCTGCTCCAAACCAGAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA 1740 0.4379 MAANSGNISFASSQSGSQVHGDTDSVHVAVCSLCQKSLSHDNEMASDLAINGVCGDCKFLLLEDFGNHTVSQGSRRRLRGRFRHNSSDSVDNSSQQIPHVVSTVRQYQSPASGEDDQLVDGDTPAWSMQYASTHTTPSGSRRWRHVLSDTDSDGFDNWNSFYGENESSVSFRRYRVPHGETDSLSHSAYGGDSDISMDTHSFVGTGVFNLPDERDEFDSDTDIDPMHAGRGQWFSDEDDEEEDEDGEEEEEEEEEEEDDDDDEEEVEVDREWELAEAEEAEATARLQIFFTSSPSESRDHNNWEQRFNSTESEGMFSQIIRDTWQALEDADLPHGANFGDYLDARRFEDLLEHLAENDSSRRGAPPAAVSFMKNLPRIVIGKEHEKHGELVCAICKDVLAPGTEVNQLPCSHLYHIDCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQINVMDDSSSDVSDGDEVNEENGNSQDSQDEIQQRDVSTGSTAISSTTSGRGRWFFLAAAPIVSLVGIVLVLWLGNNSEIEGNRHLGSHYLSGQNQHAVHAYSAPNQRESRSRRWWCPF* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0800 579 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 311 496 - -
Pvu8g0800 579 MobiDBLite consensus disorder prediction 1 20 - -
Pvu8g0800 579 MobiDBLite consensus disorder prediction 211 270 - -
Pvu8g0800 579 Pfam Ring finger domain 392 433 IPR001841 -
Pvu8g0800 579 SUPERFAMILY RING/U-box 373 439 - -
Pvu8g0800 579 MobiDBLite consensus disorder prediction 470 484 - -
Pvu8g0800 579 MobiDBLite consensus disorder prediction 485 506 - -
Pvu8g0800 579 SMART ring_2 392 432 IPR001841 -
Pvu8g0800 579 Coils Coil 237 257 - -
Pvu8g0800 579 MobiDBLite consensus disorder prediction 463 506 - -
Pvu8g0800 579 MobiDBLite consensus disorder prediction 235 270 - -
Pvu8g0800 579 ProSiteProfiles Zinc finger RING-type profile. 392 433 IPR001841 -
Pvu8g0800 579 PANTHER OS06G0101300 PROTEIN 311 496 - -
Pvu8g0800 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 439 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0800 Pvu-Chr8 7560730 7564125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0800 23 579 C3H Transcription Factor Family AT5G01980 42.114 1.91e-120 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0800 - - pvu:PHAVU_008G078700g 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0800 8 7560730 7564125 Pvu8g0800 8 7560730 7564125 ECH