Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0715 ATGTTGGGCTCAGGTACCAATTTGGTGACCACGGTCATTGGGTTTGGCATGAGTGCCACTTTCATTGTGTTTGTCTGCACCAGAATCATTTGTGGAAGGTTAAGAGGGGGTGTTGAATCTCGGATGGTGTATGAGATTGAATCAAGAATTGATGTAGAACAGCCAGAACATCATGTTAATGACCCTGAATCAGAACCTGTTCTGCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGTATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACCTGTCCAGTATGCCGTCTGCCATTGAAAAACTCTTCTGAAACAAAACATGCCAGACCTGTGACGTTTACCATGAGCCAATCCCTTGATGAGTCTCACACATCAGAAAGAAATGAAAATATAGGGAGACATGTTGAACCTACTCCTACTGCAGCCAGTGACTCTTTACAACCAAATCCAGGTGAACAAGGAGCAAGACAATCTTAG 585 0.4239 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMVYEIESRIDVEQPEHHVNDPESEPVLLDAIPTLKFNQEAFSSLEHTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHARPVTFTMSQSLDESHTSERNENIGRHVEPTPTAASDSLQPNPGEQGARQS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0715 194 PANTHER OS02G0676500 PROTEIN 1 167 - -
Pvu8g0715 194 SMART ring_2 90 131 IPR001841 -
Pvu8g0715 194 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Pvu8g0715 194 MobiDBLite consensus disorder prediction 142 157 - -
Pvu8g0715 194 Pfam Ring finger domain 89 132 IPR001841 -
Pvu8g0715 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
Pvu8g0715 194 MobiDBLite consensus disorder prediction 142 194 - -
Pvu8g0715 194 CDD RING-H2_EL5_like 89 132 - -
Pvu8g0715 194 MobiDBLite consensus disorder prediction 176 194 - -
Pvu8g0715 194 PANTHER OS11G0150450 PROTEIN 1 167 - -
Pvu8g0715 194 SUPERFAMILY RING/U-box 80 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0715 Pvu-Chr8 6324438 6326775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0715 79 135 C3H Transcription Factor Family AT4G10160 54.386 2.66e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0715 - - gmx:100790202 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0715 8 6324438 6326775 Pvu8g0715 8 6324438 6326775 ECH
Pvu8g0715 8 6324438 6326775 Pvu10g0965 10 34055353 34056594 PCT