LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g0712	ATGGGTGTTGGTGCTAATTTCTGGGAGCTGCTAAAGCCCTATGCACGCCATGAGGATTTTGATTTCTTGAGGAACAAGCGAGTTGCTGTGGACCTTTCATTCTGGATTGTTCAGCATGAGAATGCCATGAAAGCCACTCATGTCAGAAAACCTCACCTCAGACTTACCTTCTTCCGCACCATCAATCTCTTATCCAAGTTTGGGGCATTTCCTGTGTTCATTGTTGATGGGACTCCATCACCATTGAAAACACAGGCCAGGATTGCAAGATTTTTTCGGTCTTCTGGCATTGAGTTGACTAGCTTGCCAGTGTCTGAAGGTGTTTCACCTGAGAGGAGCCGCATGTTTTCAAATCGAGTTCAAGAATGTGTGGAACTGGTTAAACTACTAGGAATGCCTGTACTAAAGGCTAAAGGAGAGGCCGAAGCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCATTATAAAATGTTTCTGTCCCAATTCCAAAGAACCGTTTGAATGCTACAATATGTCAGATATTGAAGCTGGACTTGGATTGAAGAGGAAACACTTGATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGAATTGGGCTTGATAATGCACTTCATTTTGTTATAGCTTTTAATGAAGATGATATATTGAATAGATTACAGGAGATAGGCAAAGGGGGCAATACTTCACAAATTCCCAGCTGCACTATATTTGAGGACAATATAGATGTTGATGGAAACTACCCGAATAGGAAACAATCTCATTGCTCATTTTGTGGGCATCCTGGCAGCAAGAAAGATCATATGAAAATTTCTTGTGAATACTGTGTCACAAAGGATGATGAAGGCTGCCAGAGAAAACCAGAGGGTTTTAAATGTCATTGCTTCTCATGTGTTTCGAATAGGAGACATAAGGAGCAAAAAAGAGAGGAAAATTGGTACTCAAAAATTTGTCACAAAATTGCAGAGGAGCCAAACTTTCCCAAAGATGAGATCATTGACATGTATTTGTGCAATGACAACGGTTACTTTTCAGTAAGTGATGGTCCACAGATTATGTGGGGAAAACCCAATATTGAGATGCTGATTGATTTTCTAAACTTCCATCAGCGTTGGGAACCATCCTACATTCGACGGACTATGTTTCCTATGATGTCCACCATCTTTCTGAGAGATATGTCTACACCGACCCGAGAAACTTTGTTATTTGGTCAATATGAGTTTGATTCAGTAGAACGTGTGAAGATGAGATATGGATATCAGTTTTATGTGGTCAAGTGGAGACGTGCTGGGGGAAACATTACCACCAGCAAAGTTCCATCAAATGAATCCAGTGTGCAACAAGATGTAGTAGAGCTTGATGAAACGGTGGATCTACTGGACGACTGCAGCATTCCTGAGATTCGTGTAGATGATGGATGTAGTTTTCTGTTTACTGATGAAAATATGGACCTAGTAGGAACTGCTTTTCCAGCAGAAGTCCAAAGTTTTTTGCAGGAGCAGGAAAGGAAAAGTAGAAAGAGTTCAACATCAAGGTGCCAAGAAAATGAAATATCAGCTACTCCAAACCCAAGAACTACTCAGCTAAACATCACAGAGTTCTTTCCATCAACCAAAATTAAACATCGTCAATCAAAACAAAGAGAAGAATCATCCAATGATGCTGATAGTGAGGGCAGCAAGGGTTCAAAAATGAAAAGAAAAATGTCTAATCCTGACAAGCTTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGACTAG	1830	0.4071	MGVGANFWELLKPYARHEDFDFLRNKRVAVDLSFWIVQHENAMKATHVRKPHLRLTFFRTINLLSKFGAFPVFIVDGTPSPLKTQARIARFFRSSGIELTSLPVSEGVSPERSRMFSNRVQECVELVKLLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDNALHFVIAFNEDDILNRLQEIGKGGNTSQIPSCTIFEDNIDVDGNYPNRKQSHCSFCGHPGSKKDHMKISCEYCVTKDDEGCQRKPEGFKCHCFSCVSNRRHKEQKREENWYSKICHKIAEEPNFPKDEIIDMYLCNDNGYFSVSDGPQIMWGKPNIEMLIDFLNFHQRWEPSYIRRTMFPMMSTIFLRDMSTPTRETLLFGQYEFDSVERVKMRYGYQFYVVKWRRAGGNITTSKVPSNESSVQQDVVELDETVDLLDDCSIPEIRVDDGCSFLFTDENMDLVGTAFPAEVQSFLQEQERKSRKSSTSRCQENEISATPNPRTTQLNITEFFPSTKIKHRQSKQREESSNDADSEGSKGSKMKRKMSNPDKLPKSVRRRLLFD*	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g0712	609	Gene3D	-	198	259	-	-
	Pvu8g0712	609	Pfam	XPG N-terminal domain	1	90	IPR006085	GO:0004518
	Pvu8g0712	609	MobiDBLite	consensus disorder prediction	562	609	-	-
	Pvu8g0712	609	CDD	PIN_GEN1	2	202	-	-
	Pvu8g0712	609	MobiDBLite	consensus disorder prediction	523	609	-	-
	Pvu8g0712	609	PANTHER	FLAP ENDONUCLEASE GEN-LIKE 1	1	596	-	-
	Pvu8g0712	609	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	25	39	IPR006084	-
	Pvu8g0712	609	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	71	90	IPR006084	-
	Pvu8g0712	609	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	127	144	IPR006084	-
	Pvu8g0712	609	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	148	168	IPR006084	-
	Pvu8g0712	609	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	203	218	IPR006084	-
	Pvu8g0712	609	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	596	IPR006084	-
	Pvu8g0712	609	SMART	xpgineu	128	198	IPR006086	GO:0004518
	Pvu8g0712	609	Pfam	XPG I-region	131	213	IPR006086	GO:0004518
	Pvu8g0712	609	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	198	416	IPR036279	-
	Pvu8g0712	609	Gene3D	-	5	197	-	-
	Pvu8g0712	609	MobiDBLite	consensus disorder prediction	535	561	-	-
	Pvu8g0712	609	SUPERFAMILY	PIN domain-like	6	213	IPR029060	-
	Pvu8g0712	609	SMART	xpgn3	1	97	IPR006085	GO:0004518

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g0712	Pvu-Chr8	6305382	6310630	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu8g0712	16	231	Core DNA Replication Machinery Family	AT5G26680	28.511	2.29e-17	82.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g0712	K15338		-	gmx:100779848	979.548