Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0685 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTACTCCTTACCATAAGAACTGCTTCAGATGCAGTCACTGCAAGGGATGCCTCACGATGAGTACATACTCTTCAATGGATGGTGTCCTCTACTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGACAGCAAGGTCTTCGGATAAACAAAATGAGGTGAATAAGACCCCCAACCGACTCTCCTCCATGTTCAGTGGAACTCTAGACAAATGTTCAGTTTGCTCAAAAACTGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTGCCCTAGACGGTGTCCTCTACTGCAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAATTACCATCATGTACTCCAAGCTGCTGCAAACAGGAAGAATGCCACACCACCTCCTGAACCAGCTGAAGAAGAAGAGGCACCAAAGCCAGAAGAACCTGAAGAGGAAGAAACAGAAGAAAAGTCCTAA 627 0.4482 MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGCLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTARSSDKQNEVNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQAAANRKNATPPPEPAEEEEAPKPEEPEEEETEEKS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0685 208 Gene3D Cysteine Rich Protein 5 72 - -
Pvu8g0685 208 Pfam LIM domain 106 161 IPR001781 -
Pvu8g0685 208 Pfam LIM domain 10 65 IPR001781 -
Pvu8g0685 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Pvu8g0685 208 SMART lim_4 9 61 IPR001781 -
Pvu8g0685 208 SMART lim_4 105 157 IPR001781 -
Pvu8g0685 208 MobiDBLite consensus disorder prediction 191 208 - -
Pvu8g0685 208 MobiDBLite consensus disorder prediction 175 208 - -
Pvu8g0685 208 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Pvu8g0685 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Pvu8g0685 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Pvu8g0685 208 PANTHER OS06G0237300 PROTEIN 1 206 IPR045268 GO:0051015
Pvu8g0685 208 Gene3D Cysteine Rich Protein 102 170 - -
Pvu8g0685 208 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pvu8g0685 208 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pvu8g0685 208 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 206 - -
Pvu8g0685 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0685 Pvu-Chr8 6112188 6114287 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pvu8g0685 LIM 1.1e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0685 - K09377 gmx:100788569 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0685 8 6112188 6114287 Pvu8g0685 8 6112188 6114287 ECH
Pvu8g0685 8 6112188 6114287 Pvu10g0997 10 34846249 34848313 PCT