Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0683 ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAGGGACCTTGGACAGCTGAAGAGGATGAAATTCTTGCTAGTTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGGCTTAGGTGGACAAACTACCTCAGACCTGACATCAAGCGTGGTCCCTTTACTCAAGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCCTCACAATTACCAGGAAGAACAGACAATGAGATAAAGAACTTGTGGAACACCCACTTGAAGAAGCGTCTTAAAAGCATGGGACTTGACCCTAGAACCCACGAGCCATTGGCCTCATCTCCATCTTACCCCTTCCACAAGGCACATGCATCTGTTTCCACACGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAGGCCAGGCTCTCAAATGAGTCAACAAGGTTCAGCCAGAACACCACCAATCCTAATTCAGATGCCAAAACCACTGACTCTGACTACTTTCTCCGCATTTGGAACTCTGAGGTTGGAGAGGCATTTCGCAATGTTGTTGTTCAACACAAAGCTGATGACAACAAAATCACCACTACAAGCTCCTGCCCCAGTCCCCTCTCTGCAGGGTCATCTTCCAACAAATGTGAGTCAATTGCAACAAATGCAGATTTGGCTTCTATTGCACAAGAAATTACGCCCTCTAACTTTGTGAAACAAGAGCTGGAGTGGAGGACTCGTGGATCTGATTCTTCAAGCTCTAATGACATGGAGGATTCATCAGACACTGCTTTGCAGCTCCTGTTAGATTTTCCTATAAACAATGATATGAGCTTCTTAGAAGGAAACTCTTTTATGTGTCCACTTTAG 927 0.4595 MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTQEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPRTHEPLASSPSYPFHKAHASVSTRHMAQWESARLEAEARLSNESTRFSQNTTNPNSDAKTTDSDYFLRIWNSEVGEAFRNVVVQHKADDNKITTTSSCPSPLSAGSSSNKCESIATNADLASIAQEITPSNFVKQELEWRTRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFMCPL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0683 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pvu8g0683 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 302 - -
Pvu8g0683 308 MobiDBLite consensus disorder prediction 165 184 - -
Pvu8g0683 308 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pvu8g0683 308 Gene3D - 11 68 - -
Pvu8g0683 308 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pvu8g0683 308 CDD SANT 16 62 IPR001005 -
Pvu8g0683 308 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pvu8g0683 308 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pvu8g0683 308 SMART sant 67 115 IPR001005 -
Pvu8g0683 308 SMART sant 13 64 IPR001005 -
Pvu8g0683 308 PANTHER PROTEIN ODORANT1-LIKE 1 302 - -
Pvu8g0683 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pvu8g0683 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pvu8g0683 308 MobiDBLite consensus disorder prediction 164 184 - -
Pvu8g0683 308 Gene3D - 70 133 - -
Pvu8g0683 308 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0683 Pvu-Chr8 6099109 6101752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0683 1 302 MYB Transcription Factor Family AT3G61250 65.033 3.65e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g0683 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0683 K09422 - gmx:100800408 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0683 8 6099109 6101752 Pvu10g1004 10 34960666 34963434 PCT