Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0669 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATTCCTGGATCTGGAGCACAACCTGAGTTACATATGTCACCTAACATTCGACCACTCTCTAATCCGAATCTACCATTTCAATCCAGCATTGGTAGTGGTTCCATTGGATCCACATTGCCATTGGAGTCTTCTTCAATTTCGGCTCATGGTGTCAATATGGGAGCTCCTCCTGGGGTACCTCCAGGGGAACCTGTTAAAAGGAAGAGGGGAAGGCCTAGGAAATATGGCACTGATGGAACTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTGGTCATCCTGGATCCTTGACACAGAGCCAGAAACGTGGCAGAGGGCGACCACCCGGGACTGGGAAAAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCTGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTATGTATTTTGTCAGCCAATGGCGCTGTCTCAACTGTCACACTTCGGCAGCCATCAACTTCAGGCGGCACTGTCACATACGAGGGGCGGTTCGAGATAGTGTGCCTGTCAGGGTCGTACTTGGTCACTGATAGTGGTGGCTCACGCAATCGAACTGGTGGACTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGAGGAGTTGGTGGAGTTCTCATTGCGTCAAGTCCTGTTCAGGTTGTAGTTGGGAGTTTTCAATGGGGTGGATCAAAGACAAAGAACAAGAAGAAGGAAAGCTCGGAAGGTGCAGAAGTTGCTGTGGAGTCAGACCATCAGGGAGTTCATAATCCAGTGGCACTGAACAGCATCTCACCAAATCAAAACCTTTCTCCAACCCCTTCATCTTTAAGTCCGTGGTCACAATCGCGACCGTTGGACATGCGTAATTCCCATGTGGACATTGATTTGATGCGTGGGTGA 1026 0.4903 MDRGDQMALSGSYYMQQRGIPGSGAQPELHMSPNIRPLSNPNLPFQSSIGSGSIGSTLPLESSSISAHGVNMGAPPGVPPGEPVKRKRGRPRKYGTDGTVSLALTPTPTSSGHPGSLTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFQWGGSKTKNKKKESSEGAEVAVESDHQGVHNPVALNSISPNQNLSPTPSSLSPWSQSRPLDMRNSHVDIDLMRG* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0669 341 MobiDBLite consensus disorder prediction 1 136 - -
Pvu8g0669 341 CDD DUF296 153 267 IPR005175 -
Pvu8g0669 341 MobiDBLite consensus disorder prediction 33 69 - -
Pvu8g0669 341 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Pvu8g0669 341 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Pvu8g0669 341 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Pvu8g0669 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 310 IPR039605 GO:0003680
Pvu8g0669 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Pvu8g0669 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 310 - -
Pvu8g0669 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Pvu8g0669 341 MobiDBLite consensus disorder prediction 271 341 - -
Pvu8g0669 341 MobiDBLite consensus disorder prediction 297 329 - -
Pvu8g0669 341 MobiDBLite consensus disorder prediction 273 287 - -
Pvu8g0669 341 MobiDBLite consensus disorder prediction 100 125 - -
Pvu8g0669 341 Gene3D - 154 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0669 Pvu-Chr8 5985142 5991857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0669 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.311 1.50e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0669 - - gmx:100814615 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0669 8 5985142 5991857 Pvu8g0669 8 5985142 5991857 ECH
Pvu8g0669 8 5985142 5991857 Pvu10g1010 10 35043620 35049071 PCT