Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0620 ATGCAATCTGGCGGCGGCCCCGGTGGTGGGCCGGGCCGGAATCCGGCGGGACGGGCGGCATCGACGTCGTCAGCGGCTGCTTCGCCGTCTTCTTCGTCATCGGCTGCGTCGCACTTGGAGTCATTGCAGCAACAGCAACAGCAGCAGCAGCAGCACATAGGTTCTAGGCAGTCATTTCAACAGCAGCTGCTTAGAAAACCTGAAGGGAGTGAGGCATTTTTGGCATATCAAGCAGGTCTTCAAGGAGCATTTGGGAGTAACAATTTCCCATCTAGTTCCATGCAACTGCCTCAACAGTCTCGAAAATTTGTTGATCTAGCTCAGCATGGATCCAACCAGGGTCAAGGTGTTGAACAACAAATGCTAAATCCTGCACAAGCAGCATACTTCCAATATGCTCTGCAGGCTTCACAACAAAAGCCTGCTTTGGCAATGCAGTCACTGCAGCAACCGAAAATGGGAATTCTGGGCCCTTCCTCTGTAAAGGATCAGGATATGCGAATGGGAAATTTGAAAATGCAGGATCTTATGTCCATGCAGGCAGTAAATCAAGCCCAAGCATCATCGTCCAGAAATTCATCTGACCATTTTAATCATGGGGAAAAGCGTGTAGAGCAAGGGCAGCAGCTAGCACCTGCCAGGAAGAGTGAAGGAAATCCTTCAAGTCAGGGATCAGCTGTTGGAAACATAGTACCTGGAAATATTATAAGCCCCGTGCAAGCTCTGGCAAATCAGCAGAGCATCTCAAACACTATGAATAACCAGATTGCAATGTCTGCTCAATTGCGGGCTATGCAGGCATGGGCACATGAACAAAATATTGATATGTCACATCCTGCAAATGCTCAGTTAATGGCTCAGCTTATTCCATTGATGCAATCAAGGATGGTTCAACAACCAAAGGCAAATGATACTAACTCAGGTGCACAGTCATCACCTGTCCCTGTTTCAAACCAGCAGGTTATTTCTCCAGCAATGGCAAGTGAGAGTTCAGCACGTGCTAATTCATCTGGTGATGTGTCTGCACAGTCAGGTTCTGTGAAAGCCAGGCAGATGGCTCCACCCAACCATTTTAGCCCACCAATCAGTGCTGGTATAGCCGGTACCTCTAGTGACATGGCAGTACAGCAATTCAGTCTTCATAGCAGAGACACTCAAGGATCTTTGAAGCAGTCAGTTCTAATCGGAAATGGAATACATCCACAGAAGACCTCTGCAAACATGAACATAGGTGCAGATCATCCTCTGAATGCAAAAGCTTCATCATCTTGTCCAGAACCGGCAAAAATGCAGTACATCAGGCAATTAAACCAATCTGCTTCTCAGGCTGGAGGTCTGACAAATGAAGGTGGATCAGGAAATTGCACCAAATCTCAAGCGGGGCCATCTCAGACACCTCAAAAAAGAAATGGTTTCACCAAACAACAGCTTCACGTTCTTAAGGCACAAATACTAGCATTTCGGCGTCTAAAGAAAGGAGAAGGTGCACTTCCACAGGAACTTCTTCGGTCCATCAATCCACCTCCTCTTGATTTGCAAGTGCAGCAGCCAATTCATTCTGGAGGAGCACAAAATCAAGAGAGATCTGCTGGAAATATTGTGGCTGAACAGCCAAGGCAGAATGAGGCCAATGCCAAAGATTCACAGCATATCCCATCCATTAGCGGAAAGAGCTCTTCAAAGAAGGAAGGCTTTATTAGAGATGAGAGCAATGCTGTAACAGCAGTTCATGTGCAGGCCCCATCTCCCATGATAAAGGAATCTGCTGGAAAGGAAGAGCAGCAGTCTGTTGTGTGCTCTGCTAAGTCAGATCAGGAAAATGAACATGGAATGAACAGAACTTCTGGTAGAAATGAGTTAGTATTAGACAAGGGAAAAGGTGTTGCTGTTCCCCAGTCTTCTGTAACTGAGACAGTGCAACTTAATAAATCCACTCAGGCGAGCACTGTTGCCCAGCCAAAGGATACGCTTTCCACCAGAAAATACCATGGACCCCTATTTGATTTTCCTTTCTTCACCAGGAAACATGATTCCTTTGGGTCGTCAATGTTGCTCAACAACAACAACAATTTGTCATTGGCATATGATGTAAAAGAACTTCTGTTTGAGGAAGGCATGGAGGTCCTTAGCAAGAGAAAGACAGAGAATTTGAGGAAGATTGAAGGTTTACTAGCAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTTCACGTTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGAAAGTTTGTTAGGCTGTGTGAACGTCAGCGTATGGAACTTGCTAGACAAGTGCAGGCATCTCAGAGAGCTTTAAGGGAGAAACAACTGAAATCTATATTTCAATGGCGCAAGAAGCTTCTTGAAACACACTGGGCCATTCGTGATGCCCGTACTGCTCGCAACAGAGGGGTGGCCAAATATCATGAAAGGATGTTGAGAGAGTTCTCAAAACGTAAGGATGAGGACAGAAATAAAAGGATGGAAGCCTTAAAAAATAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATTCAAGGTGATGCTGCGGAGAGATATGCTGTCCTCTCAACTTTCTTAACCCAGACTGAAGAGTATCTCCATAAATTAGGAAGTAAGATAACCACTACTAAGAATCAACAGGAAGTGGAGGAGGCTGCCAAAGCTGCTGCAGGTGCAGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCGGCAGCAGCTTGTGCTGGAGAGGAAGTCATGATTAGAAATCGTTTTATGGAGATGAATGCCCCTAAAGACAGTTCATCTGTCAACAAGTATTACAGCCTTGCTCATGCAGTGAGTGAGAAGGTTGTACGTCAACCATCAATGTTACGGGCCGGAACACTTAGAGACTATCAACTGGTTGGTTTGCAATGGATGCTTTCCTTGTATAACAACAAATTAAATGGGATTTTGGCAGATGAGATGGGTCTTGGAAAAACTGTACAGGTTATGGCATTAATAGCCTATTTGATGGAGTTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTGTATACTTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGAGGGAAGGATTACCGGTCAAAATTATATTCACAGGAGATTATGGCTATGAAATTTAATGTCCTGGTGACTACTTACGAGTTCATCATGTATGATCGGTCAAGGCTTTCAAAAATTGATTGGAAGTATATAATAATCGATGAAGCACAGAGAATGAAGGATAGAGAATCAGTTCTAGCTCGTGATCTTGATAGATATCGTTGTCAAAGACGCCTGCTTTTGACAGGAACACCTTTACAGAATGATTTGAAAGAACTGTGGTCGCTTTTAAATTTACTTCTTCCAGAGGTTTTTGACAACAAGAAAGCCTTTAATGATTGGTTCTCAAAGCCATTTCAAAAGGAAGTTTCCACTCAAAATACAGAAGATGATTGGCTTGAGACTGAAAAAAAAGTTATCATCATCCATCGACTTCACCAAATTCTCGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGAGGTTGAGGGTTCACTACCGCCAAAGGTCTCTATAGTCTTACGATGTAAGATGTCAGCTTTGCAGAGTGCCATATATGATTGGGTCAAATCAACCGGTACCCTTCGACTTGATCCCGAAGGTGAGGAATCTAAGATTCAAAAGAATCCGCTTTACCAGGCAAAAGAGTACAAGACTTTAAATAACAGATGCATGGAGTTGCGGAAAACTTGCAATCATCCATGTCTTAATTACCCATTAGTTAATGAATTATCTACAAATTTAATTGTAAAATCTTGTGGGAAATTGTGGGTCCTGGATAGGATCCTTATAAAGCTTCAAAGAACTGGTCATCGAGTTTTGCTGTTTAGTACCATGACAAAACTTCTAGATATCTTAGAAGATTACTTGAATCTGCGAAGATTTGTGTACAGAAGAATTGACGGGACTACTAATTTGGATGACCGTGAATCAGCAATAATGGACTTTAATAGCCCTGATTCAGACTCTTTCATCTTCTTGCTTAGCATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGATCCAAATCCGAAAAATGAGGAGCAGGCTGTGGCAAGAGCTCATCGTATTGGGCAGAAAAGAGAAGTCAAAGTTATCTACTTGGAGGCTGTTGTTGACAAAATCTCTAGCCATCAGAAGGAGGATGAACTGAGAAGTGGAGGCACTGTCGATATGGAGGATGAATTTGTGGGTAAGGATCGCTATATAGGATCTGTTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGATATGGCCGATGAGGTTATCAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGGCGTTTGACTTTAGAGACATTGTTACATGATGAAGAAAGGTATCAAGAAAATGTCCATAATGTTCCTTCTCTTCAGGAGTTAAATCGCTTGATTGCTAGGAGTGATGAGGAAGTGGAGTTGTTTGATCAAATGGATGAAGAACTGGATTGGCCCGAGGAGATAATGCAACATGATGAGGTGCCTCAGTGGCTTCGAGCCAATACAAGAGAAGTGAATGCTGCTATTGCTTCTTTATCGAAAAAACCATCAAAGAACATGTTGGGTGGTAATATTGGCATGGATAGTGAGGTGGGTTCTGAAAGGAGAAGGGGACGGCCCAAGGGAAAAAAACATCCTAATTATAAAGAGTTGGAAGATGAAAATGGAGAATATTCTGAAGCAAGCTCTGAAGAGAGAAATGAATATTCTGCACAAGAAGAAGGGGAAATTGGAGAGTTTGAAGATGATGTTTATAGTGGGGCTGATGGGCATCAACCAGAAGAGGATGGTTTAACTTCTGATGCTGGATATGAAATTGCTCGTTCAAATGCTAGACATAATCATGTGGCTGAAGAAGCTGGTTCCTCAGGATCGTCTTCCGACTGTCAAAGATTGGTGCAAACTGTTTCACCTTCAGTTTCTGCTCAGAAATTTGCTTCCCTCTCCGCATTGGATGCCAGGCCAAGCTCCATTTCAAAAATAATGGGAGACGACTTGGAGGAAGGGGAAATTGCAGTATCAGGTGATTCTCACATGGATCATCAACAGTCAGGCAGTTGGATTCATGATCGTGATGAGGGGGAAGATGAACAAGTTTTGCAGAAACCCAAGATCAAGCGGAAGCGTAGTCTTCGTGTTCGTCCCCGTCATACTATGGAAAGGCCTGAGGACAAGTCTGGCAGTGAGATGGTATCTCTTCAACGGGGAGAATCATCCCTTTTGGCAGACTATAAATATCAAATGCAAACAAGGACTGATACGGAAACAAAATCACTTGGAGACAACAATGCCAGCAAGCATGATAAGAATGCAACATCATTAAAAAATAAGCAAAAATTACCTTCAAGAAAAGTAGGTAATACATCCAAATTGCAGGGGTCACCTAAGTCTAATCGTTTGAATTGCACGTCTGCTCCTTCAGATGATGGTGGTGAACACCCTAGAGAGATTTGGGAGGGGAAGCCTCTCAATTCAAATGGATCTTCAGCTCATGGAACTAAGACGACTGAAATAATCCTAAGAGGATGCAAAAATGTAATTAGCAAGCTCCAAAGGAAAATAGACAAGGAAGGCCATCAGATTGTACCTTTGCTGACAGATTTGTGGAAGAGGATTGAGAATTCTGGGTATGCAGGTGGATCTGGGAACAGTCTGTTGGATTTACGGAAGATTGACCAGCGGATTGATAGAATGGATTATACTGGAGTAATGGAGCTCGTGTTTGATGTACAGTTCATGTTAAGGGGTTCAATGCATTTCTATGGATATTCATTTGAGGTGAGATCTGAAGCAAGGAAGGTTCATGATCTATTCTTTGACATCCTGAAAATCGCATTCCCGGATACAGATTTTGGAGAAGCAAGAAGTGCACTTTCTTTCACCAGCCAAATTCCGGCTGGTACCGCCGCATCCCCAAGGCAAGTGACAGTTGGCTCCAGCAAAAGGCACAGAGCGACCAACGATGTGGAAACCGATCCAATCCCTTCACAGAAGCCGCCATCTGCTTCTAATGGCGAAAGCACCAGGTTCAAAGGTCATTTGAAGGAGTCCAAGACTGGAAGTGGTGGCAGCAGTGCGCGTGAGCAACCTCAGCAGGATAATCCTCCAATGCTTACTCATCCAGGTCAGTTGGTTGTGTGCAAGAAGAAAAGAAATGACAGGGAAAAGTCATTGGGGAAGGGCAGGAGTGGATCAGCATGTCCTGTTTCTCCACCTGGTGCTATAAAAAGTCCAGGGTCAGGTTCAACTCCAAAGGATGGTAGATGGGGTAGTCAGCCATCTCAACATTCAAATGGGTCTGGTGGGTCAGTTGGTTGGGCAAATCCTGTAAAGCGTTTGAGAACAGATTCTGGGAAGAGGAGACCAAGCCATATGTAG 6573 0.4368 MQSGGGPGGGPGRNPAGRAASTSSAAASPSSSSSAASHLESLQQQQQQQQQHIGSRQSFQQQLLRKPEGSEAFLAYQAGLQGAFGSNNFPSSSMQLPQQSRKFVDLAQHGSNQGQGVEQQMLNPAQAAYFQYALQASQQKPALAMQSLQQPKMGILGPSSVKDQDMRMGNLKMQDLMSMQAVNQAQASSSRNSSDHFNHGEKRVEQGQQLAPARKSEGNPSSQGSAVGNIVPGNIISPVQALANQQSISNTMNNQIAMSAQLRAMQAWAHEQNIDMSHPANAQLMAQLIPLMQSRMVQQPKANDTNSGAQSSPVPVSNQQVISPAMASESSARANSSGDVSAQSGSVKARQMAPPNHFSPPISAGIAGTSSDMAVQQFSLHSRDTQGSLKQSVLIGNGIHPQKTSANMNIGADHPLNAKASSSCPEPAKMQYIRQLNQSASQAGGLTNEGGSGNCTKSQAGPSQTPQKRNGFTKQQLHVLKAQILAFRRLKKGEGALPQELLRSINPPPLDLQVQQPIHSGGAQNQERSAGNIVAEQPRQNEANAKDSQHIPSISGKSSSKKEGFIRDESNAVTAVHVQAPSPMIKESAGKEEQQSVVCSAKSDQENEHGMNRTSGRNELVLDKGKGVAVPQSSVTETVQLNKSTQASTVAQPKDTLSTRKYHGPLFDFPFFTRKHDSFGSSMLLNNNNNLSLAYDVKELLFEEGMEVLSKRKTENLRKIEGLLAVNLERKRIRPDLSRLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWRKKLLETHWAIRDARTARNRGVAKYHERMLREFSKRKDEDRNKRMEALKNNDVDRYREMLLEQQTSIQGDAAERYAVLSTFLTQTEEYLHKLGSKITTTKNQQEVEEAAKAAAGAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDSSSVNKYYSLAHAVSEKVVRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRSRLSKIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEVSTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEEVEGSLPPKVSIVLRCKMSALQSAIYDWVKSTGTLRLDPEGEESKIQKNPLYQAKEYKTLNNRCMELRKTCNHPCLNYPLVNELSTNLIVKSCGKLWVLDRILIKLQRTGHRVLLFSTMTKLLDILEDYLNLRRFVYRRIDGTTNLDDRESAIMDFNSPDSDSFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYLEAVVDKISSHQKEDELRSGGTVDMEDEFVGKDRYIGSVESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQENVHNVPSLQELNRLIARSDEEVELFDQMDEELDWPEEIMQHDEVPQWLRANTREVNAAIASLSKKPSKNMLGGNIGMDSEVGSERRRGRPKGKKHPNYKELEDENGEYSEASSEERNEYSAQEEGEIGEFEDDVYSGADGHQPEEDGLTSDAGYEIARSNARHNHVAEEAGSSGSSSDCQRLVQTVSPSVSAQKFASLSALDARPSSISKIMGDDLEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHTMERPEDKSGSEMVSLQRGESSLLADYKYQMQTRTDTETKSLGDNNASKHDKNATSLKNKQKLPSRKVGNTSKLQGSPKSNRLNCTSAPSDDGGEHPREIWEGKPLNSNGSSAHGTKTTEIILRGCKNVISKLQRKIDKEGHQIVPLLTDLWKRIENSGYAGGSGNSLLDLRKIDQRIDRMDYTGVMELVFDVQFMLRGSMHFYGYSFEVRSEARKVHDLFFDILKIAFPDTDFGEARSALSFTSQIPAGTAASPRQVTVGSSKRHRATNDVETDPIPSQKPPSASNGESTRFKGHLKESKTGSGGSSAREQPQQDNPPMLTHPGQLVVCKKKRNDREKSLGKGRSGSACPVSPPGAIKSPGSGSTPKDGRWGSQPSQHSNGSGGSVGWANPVKRLRTDSGKRRPSHM* 2191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 1579 1641 - -
Pvu8g0620 2190 SMART bromo_6 1897 2012 IPR001487 GO:0005515
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 181 229 - -
Pvu8g0620 2190 CDD SF2_C_SNF 1302 1427 - -
Pvu8g0620 2190 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1307 1484 IPR001650 -
Pvu8g0620 2190 SMART helicmild6 1333 1417 IPR001650 -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 17 64 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 2055 2073 - -
Pvu8g0620 2190 Pfam SNF2-related domain 979 1283 IPR000330 GO:0005524|GO:0140658
Pvu8g0620 2190 ProSiteProfiles QLQ domain profile. 471 507 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 2033 2190 - -
Pvu8g0620 2190 SMART QLQ_2 470 507 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 2033 2047 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 2083 2103 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 1610 1638 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 541 560 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 541 565 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 508 529 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 1781 1795 - -
Pvu8g0620 2190 PANTHER SNF2/RAD54 HELICASE FAMILY 35 2122 - -
Pvu8g0620 2190 Gene3D - 778 851 - -
Pvu8g0620 2190 Gene3D - 1216 1427 IPR027417 -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 2149 2169 - -
Pvu8g0620 2190 Coils Coil 770 790 - -
Pvu8g0620 2190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 957 1206 IPR027417 -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 1748 1769 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 1818 1897 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 298 367 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 509 529 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 442 473 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 1741 1801 - -
Pvu8g0620 2190 Pfam Helicase conserved C-terminal domain 1308 1417 IPR001650 -
Pvu8g0620 2190 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 988 1153 IPR014001 -
Pvu8g0620 2190 Pfam QLQ 472 505 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pvu8g0620 2190 SMART ultradead3 972 1161 IPR014001 -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 1840 1870 - -
Pvu8g0620 2190 Gene3D - 967 1215 IPR038718 -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 212 229 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 298 350 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 1 64 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 2111 2125 - -
Pvu8g0620 2190 MobiDBLite consensus disorder prediction 1825 1839 - -
Pvu8g0620 2190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1210 1547 IPR027417 -
Pvu8g0620 2190 Coils Coil 1613 1633 - -
Pvu8g0620 2190 PANTHER ATP-DEPENDENT HELICASE BRM 35 2122 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0620 Pvu-Chr8 5530800 5542410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0620 958 1442 RAD5 or RAD16-like Gene Family AT1G02670 25.135 5.05e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu8g0620 SNF2_N 1.9e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0620 - - gmx:100811608 3648.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0620 8 5530800 5542410 Pvu8g0620 8 5530800 5542410 ECH
Pvu8g0620 8 5530800 5542410 Pvu10g1045 10 35555021 35568060 PCT