Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0618 ATGATGGGTAACGGGGAGCCTCTGGATTTGTATAAACTTTTCATGGTGGTAAAGAAGAAAGGTGGTTATGATGCTGTCTGTAAGAATAGGTTGTGGGATGTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGTGGAACTTGTTTACAGCAAACACTTGAGTACTCTAGATAAATGTTTGAAGAATGTTGCTGGTGGCAAGTTTGCTGAATGTGGTTTAGAGGGTGATAGAGTTAAGTTTCACAAGCATTTGATGAAGGCACACACTGAATCCGTGTTGAACGGTTCTGGCGGGGAGGAGGCGGGAGATGAACATGAGAGGAGGGAGTGTGGCTGTCCGGATGGGAGGAAGTTCAGTGGTAGTAATAGAGTCAAGTGTGTGAAACCAGTGTCCAATGGGGTTGAACACGAGAGTGCATATGAGTATCTAGGTGGGAGTAAGTCATGTGGTAGTAATAGTATGAAAGACAAAAAATCAGGTTCTATCGGGGATGAATTTGATAATGTACGTGACTATCTAGAGGAGAGGAAGTTGTGCGGTACGAATAGGGTGAACGGGGTGAATCCAGATTCCAATGCGGCCAAGAAAGTTAGGAGGTCAGCACTTCGACTTGTTGATTTGGACATGCTGGAGGACCATGAGACGGAAAGTGACATGCTTAGATTGTCAAATGAAAGCAAGATCAGCAATAAAGATAACGATGACGGTAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACAAAGAGAAATTTGGTCACAAGAGGAAGAGAGAATCTATGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCAATTGGTTTGATTCCTGAGAAGTCTAAGTGGAAGTCATGCAGTAGTCAGGAGATCTGGAAGCAGGCTTTGTTGTTTCGAGAAGCAGTCTTTCTGAAGAAAGATTTCGAGACAGACAGTGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTTCATGTATGATGATCGCGTTGGGGCATTGTACAATTTTAGACAGAGGTTGAAATGTGATGAGAGGTCTTCATTGGGGAAATCTACATCTGATGGAGTTGTCTCCTCTTCTTCGTCTAGAACAAGAAGAAGAACACGTGGAGGTTTGGAGAGAACCCGGAGTGCTCGAGCTGAAGATCGGGTGGACAAAAAGTTACTTGAATCTTGTTCTGCACTCTCGAGTCTTGATAAATGTGCTCGAGTGCACATCCCGGTGGGGCCAAATCATCAAGCTGAAGTGCCAAAATGGACTGGCATGACTTGTGAGAGTGATTCTAAGTGGTTGGGGACAGAAATATGGCCTCCAAAAGTTGTAAAATCCAAATGGTGTATTGTTGAAAGGGACCCGATTGGAAAAGGAAGGCAAGATTCATGTGGGTGCCCAGTTCAAGGTTCTGTTGAGTGTGTCCGGTTTCACGTTGCTGAGAAAAGGTCTAAAGTTAAAATGGAACTGGGTGAGGCTTTTTTCCAATGGAATTTAGACAAGGTAGGTGAAGATGTCAGGAGTTCTTGGACAGATCAAGATGAGAAGAAGTTCAAGGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTCTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCAGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAATAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAATTCACACCATTGAGGAAAGTGTTTGGACATCATACACCAAAATCACGCAGCCTCACCTTGTTATCACCCAAAAAATCCACAGGCAAAAGGGAAAATAGCAAGTGA 1875 0.4293 MMGNGEPLDLYKLFMVVKKKGGYDAVCKNRLWDVVGEEYGLGVKVGSSVELVYSKHLSTLDKCLKNVAGGKFAECGLEGDRVKFHKHLMKAHTESVLNGSGGEEAGDEHERRECGCPDGRKFSGSNRVKCVKPVSNGVEHESAYEYLGGSKSCGSNSMKDKKSGSIGDEFDNVRDYLEERKLCGTNRVNGVNPDSNAAKKVRRSALRLVDLDMLEDHETESDMLRLSNESKISNKDNDDGSDEVLILDPSSVDKEKFGHKRKRESMSEMLIWINSIAKNPCDPAIGLIPEKSKWKSCSSQEIWKQALLFREAVFLKKDFETDSEQLSWQSQKMHPFMYDDRVGALYNFRQRLKCDERSSLGKSTSDGVVSSSSSRTRRRTRGGLERTRSARAEDRVDKKLLESCSALSSLDKCARVHIPVGPNHQAEVPKWTGMTCESDSKWLGTEIWPPKVVKSKWCIVERDPIGKGRQDSCGCPVQGSVECVRFHVAEKRSKVKMELGEAFFQWNLDKVGEDVRSSWTDQDEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVSYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHHTPKSRSLTLLSPKKSTGKRENSK* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0618 624 CDD ARID 4 57 - -
Pvu8g0618 624 MobiDBLite consensus disorder prediction 577 624 - -
Pvu8g0618 624 MobiDBLite consensus disorder prediction 361 377 - -
Pvu8g0618 624 Gene3D - 1 70 IPR036431 GO:0003677
Pvu8g0618 624 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 619 - -
Pvu8g0618 624 SMART bright_3 2 66 IPR001606 GO:0003677
Pvu8g0618 624 SUPERFAMILY ARID-like 4 71 IPR036431 GO:0003677
Pvu8g0618 624 MobiDBLite consensus disorder prediction 358 391 - -
Pvu8g0618 624 Pfam ARID/BRIGHT DNA binding domain 4 58 IPR001606 GO:0003677
Pvu8g0618 624 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Pvu8g0618 624 MobiDBLite consensus disorder prediction 219 245 - -
Pvu8g0618 624 SMART ELM2_2 418 470 IPR000949 -
Pvu8g0618 624 MobiDBLite consensus disorder prediction 578 597 - -
Pvu8g0618 624 CDD SANT 518 566 IPR001005 -
Pvu8g0618 624 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0618 Pvu-Chr8 5494027 5498507 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pvu8g0618 ARID 8.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0618 - - vun:114182925 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0618 8 5494027 5498507 Pvu8g0618 8 5494027 5498507 ECH
Pvu8g0618 8 5494027 5498507 Pvu10g1047 10 35598524 35603299 PCT