Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0616 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCTGCAAGGGGCACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGCGAGTCTTTAACATCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTTTGGTTGGTTTGAACCTGGAAGCATCCGTGCCTGACACTTTCCAGCCCCCTCCCGTGCCTCTTCCTTATGACACGGTTTTGGGAGGTTCTGCATCAACAACATATTCTGAATCTGGCAGAGAAACAATTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGTTGAAGAATCAAATTATAAAGCTCAAACCAACTCCACTCCAACATCTCCAAGGAAGCAAGGACTATCAAAACCAAATGAAAGTAAAGTATTATCGATGGAAGAAGAGGATGTCTGTCCAATTTGTCTCGAAGAATATGATGTTGAAAATCCTAGAGATTTGACAAAATGTGAACACCATTTTCACCTATCTTGCATTCTTGAATGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGA 555 0.4072 MGGCCCSARKPLQGAPVYYYCPPTFEERESLTSNDGTNASLNAGFLVGLNLEASVPDTFQPPPVPLPYDTVLGGSASTTYSESGRETISSFETLITREDVEESNYKAQTNSTPTSPRKQGLSKPNESKVLSMEEEDVCPICLEEYDVENPRDLTKCEHHFHLSCILEWMERSDSCPICDQEMIF* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0616 184 SMART ring_2 138 178 IPR001841 -
Pvu8g0616 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 184 - -
Pvu8g0616 184 MobiDBLite consensus disorder prediction 99 128 - -
Pvu8g0616 184 Pfam Ring finger domain 137 178 IPR001841 -
Pvu8g0616 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 183 IPR013083 -
Pvu8g0616 184 SUPERFAMILY RING/U-box 132 182 - -
Pvu8g0616 184 MobiDBLite consensus disorder prediction 105 126 - -
Pvu8g0616 184 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Pvu8g0616 184 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0616 Pvu-Chr8 5455835 5459619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0616 1 184 C3H Transcription Factor Family AT4G00335 55.914 3.13e-65 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0616 - - gmx:100803758 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0616 8 5455835 5459619 Pvu8g0616 8 5455835 5459619 ECH
Pvu8g0616 8 5455835 5459619 Pvu10g1049 10 35633283 35636358 PCT