Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0600 ATGGTGTCCCTCAACTCAAACCCCCCTCAAACTTTTCCCTTCTTGGACCCCTTCAACATGGAGGATCCCAATAAGAAGGTTAGAAAGCCTTACACCATTACCAAGTCAAGAGAAAACTGGACGGACACGGAGCATGACAAGTTTCTCGAAGCTCTTCACTTATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTGGGTTCAAAAACAGTTATCCAGATAAGGAGTCATGCACAGAAGTATTTCATGAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCCCCTCGTCCGAAAAGAAAAGCTGCTCATCCATACCCACAAAAGGCTTCTAAAAATGCTCTCACTATATCCAAAGTTACGAGGCCTTTGCAATCTTCATCTGCTTTGTCGGAATCATCATACATTTATAGGCCAGACTCATCATCTGTGCTAAGAACTGCAGTTGGCAGTGTGCCATTATCATCTTGGGGTTATAATCTTACGCCACAAGTTGTTCTTCCTGAAGTGACAAAAGATCATATGGTGTCGAGTCAAAAAGTCAACCCCTTCAATTACTGCTACAGCAGTAGTAATGAGAGCACTCCTATGGGCTTGCCAAGTAGCAAACAGACAGATCAGGGTGACCAAGGCCAAACAATTAAAGCAATGCCAGATTTTCCAGAAGTATATAGCTTCATCGGAAGTGTGTTTGATCCAAATGTGACTAATCATTTACAAACACTACAACAGATGGACCCAATAAATGTGGAAACCGTATTGCTGTTGATGAGAAACCTCTCCACCAATTTAAGGAGTCCTGAGTTTGAGAATGAAAGAAGGATGCTGTCATTGTACAATGCTAACTCGGAGAGAACAAAATCATCTCAGCCATCTTTAACTGACAGATCAGAGAGTGTTATCCTATCTGCTTAA 918 0.4194 MVSLNSNPPQTFPFLDPFNMEDPNKKVRKPYTITKSRENWTDTEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNALTISKVTRPLQSSSALSESSYIYRPDSSSVLRTAVGSVPLSSWGYNLTPQVVLPEVTKDHMVSSQKVNPFNYCYSSSNESTPMGLPSSKQTDQGDQGQTIKAMPDFPEVYSFIGSVFDPNVTNHLQTLQQMDPINVETVLLLMRNLSTNLRSPEFENERRMLSLYNANSERTKSSQPSLTDRSESVILSA* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0600 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Pvu8g0600 305 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Pvu8g0600 305 PANTHER MYB TRANSCRIPTION FACTOR 14 293 - -
Pvu8g0600 305 SMART sant 36 84 IPR001005 -
Pvu8g0600 305 Gene3D - 39 87 - -
Pvu8g0600 305 CDD SANT 39 82 IPR001005 -
Pvu8g0600 305 MobiDBLite consensus disorder prediction 88 110 - -
Pvu8g0600 305 PANTHER SWI/SNF COMPLEX-RELATED 14 293 - -
Pvu8g0600 305 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
Pvu8g0600 305 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Pvu8g0600 305 MobiDBLite consensus disorder prediction 193 212 - -
Pvu8g0600 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Pvu8g0600 305 MobiDBLite consensus disorder prediction 281 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0600 Pvu-Chr8 5277834 5283325 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu8g0600 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0600 - - gmx:100791774 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0600 8 5277834 5283325 Pvu8g0600 8 5277834 5283325 ECH
Pvu10g1076 10 36039144 36046163 Pvu8g0600 8 5277834 5283325 ECH
Pvu8g0600 8 5277834 5283325 Pvu10g1076 10 36039144 36046163 PCT