LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g0596	ATGGCAATGGCTACTATTTCTTCTACTCTGCTTTTCTTTCTCTTTTGGCTCCATGTAATAATGACAGCATGTGAAGACAGCTTCGGACCAGATTTCGGAGCCAGCAAGATCTGTATATCAAGTATGAACTACACAGCCAATAGCACCTTCAACACCAACCTCCACACCCTCTTATCCACCCTCACTTCCCACACAGAAATCAACTACGGTTTCTACAATTTCTCACATGGCCAAAACTCAGACAAAGTATACGCCATAGGGTTGTGCAGAGGAGATCTTAAGGTAGATGAGTGTCGCAGCTGCCTCAACTCCTCTCAAGCCAATCTCAGACAGCTTTGTCCAAACCAGAAAGAGGCAATTTCGTGGGAAGAAAAGTGCATGCTGCGCTATTCCAACCGCCCAATATTTCACACCATGGACACTTCTCCACCCTATTACATGCACAACACCTACAATGCAACCGATGTGGATGAGTTCAATAAAGTGTTAGGTGGGTTACTGAGAAATCTAAGAGAGAAAGCTGCAGGGGGTGACTCTCGTCGTAAGTATGCCACGGACACTGCAATTGTTGCAAATTTTCAACCCATAAACGGTCTTATGCAGTGTACACCTGACTTGTCAAGGCAAGATTGCGGTGACTGCTTGGATTGGAGCATCTCAACTCTCCCAAAGTTTGCCAAAGACAAGGTTGGTGCCTTAGTTCTTCTACCCAGTTGTAATCTTAGGTTTGAAATCTACGAGTTCTACAACTCTACCGCCATATTAGACCCTCCACTACCACCTGCACTACCACCTGCACCACTTTCGCTTCACCAAGAGGATCATGGCAACTCTTTGCGGACTGCAATCATCATAGTTGTGCCAACTGTTATCGTTGTTCTTGTTCTGCTGATTGTTATTGGCAGATATTTAAGAAGGAAAGCAAGACAAAATCTTCTAGCTGACGATGGAGACGATGATGAAATTGGAATGGTTGAATCATTGCAATTCAATTTAAACACAATACAAGTTGCAACAAGTAACTTTTCTGATTCTAATAAATTAGGAGAAGGAGGGTTTGGATCTGTTTACCAGGGAAAGCTCTCTAATGGGCAAGTGATTGCTGTCAAAAGGTTGTCAACGAATTCTGGTCAAGGAGACTTGGAATTTAAGAATGAAGTCCTTTTGCTGGCTAAGCTTCAACACAGAAATTTAGTTAGGCTTCTTGGTTTTAGTTTGCAAGGGAGAGAAAAGCTACTTGTTTATGAATTTGTTCCGAATAAAAGTCTTGATTACTTCATATTTGATCCAACAGAGAAAGCACAATTGGATTGGGATACACGTTACAAAATCATTATAGGCATTGCTCGAGGTCTTCTATATCTTCATCAAGATTCAAGATTACGTATTATACATCGTGATCTTAAAGCAAGTAATATTCTCTTGGACAAAGAAATGATTCCTAAAATATCAGATTTTGGTATTGCAAGATTAATGACTGCAGGTCAAACACAAGAAAATACCAGCAGAGTTGTTGGAACCTTTGGATACATGGCACCTGAGTACATAATGCAAGGACAGTTTTCAGTGAAATCAGATGTTTTTAGTTTTGGTGTACTAGTTCTTGAGATTGTAAGTGGCCAAAAGAACCATGGTGTTCGTGATGAGAAGAATGGGGAAGGTCTATTAAGCTTTGTTTGGAGAAACTGGAGAGAGGGGACAGTTACAAATATTATGGATCCAACATTGAACAATAGTTCACTAGATGAAATGATAAGATGCATTGGCATTGGTTTACTCTGTGTTGAGGAAGATTTAAACAACAGACCAACCATGGCTAACGTTGCACTCATGCTTAATAGTTGTTCTATCACTCTCCCAGTGCCTAAAAAACCTGCATTTTTCATAGATAGTGCAACTGGAAGCCTTCCAAACATGTCATCGGAAGATTCATGGGCAACAAAAGGGACTCAGTCCAGTGGTATATCAGCTCAGGAATCAGTGAATGGGGCTTCAATTACTGAATTATACCCTCGTTAG	2019	0.4096	MAMATISSTLLFFLFWLHVIMTACEDSFGPDFGASKICISSMNYTANSTFNTNLHTLLSTLTSHTEINYGFYNFSHGQNSDKVYAIGLCRGDLKVDECRSCLNSSQANLRQLCPNQKEAISWEEKCMLRYSNRPIFHTMDTSPPYYMHNTYNATDVDEFNKVLGGLLRNLREKAAGGDSRRKYATDTAIVANFQPINGLMQCTPDLSRQDCGDCLDWSISTLPKFAKDKVGALVLLPSCNLRFEIYEFYNSTAILDPPLPPALPPAPLSLHQEDHGNSLRTAIIIVVPTVIVVLVLLIVIGRYLRRKARQNLLADDGDDDEIGMVESLQFNLNTIQVATSNFSDSNKLGEGGFGSVYQGKLSNGQVIAVKRLSTNSGQGDLEFKNEVLLLAKLQHRNLVRLLGFSLQGREKLLVYEFVPNKSLDYFIFDPTEKAQLDWDTRYKIIIGIARGLLYLHQDSRLRIIHRDLKASNILLDKEMIPKISDFGIARLMTAGQTQENTSRVVGTFGYMAPEYIMQGQFSVKSDVFSFGVLVLEIVSGQKNHGVRDEKNGEGLLSFVWRNWREGTVTNIMDPTLNNSSLDEMIRCIGIGLLCVEEDLNNRPTMANVALMLNSCSITLPVPKKPAFFIDSATGSLPNMSSEDSWATKGTQSSGISAQESVNGASITELYPR*	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g0596	672	SMART	serkin_6	342	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu8g0596	672	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	12	642	-	-
	Pvu8g0596	672	ProSiteProfiles	Gnk2-homologous domain profile.	141	248	IPR002902	-
	Pvu8g0596	672	MobiDBLite	consensus disorder prediction	638	672	-	-
	Pvu8g0596	672	Gene3D	-	142	248	IPR038408	-
	Pvu8g0596	672	Gene3D	-	33	134	IPR038408	-
	Pvu8g0596	672	CDD	STKc_IRAK	348	613	-	-
	Pvu8g0596	672	ProSitePatterns	Protein kinases ATP-binding region signature.	348	370	IPR017441	GO:0005524
	Pvu8g0596	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	463	475	IPR008271	GO:0004672\|GO:0006468
	Pvu8g0596	672	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	12	642	-	-
	Pvu8g0596	672	Pfam	Protein tyrosine and serine/threonine kinase	345	608	IPR001245	GO:0004672\|GO:0006468
	Pvu8g0596	672	SUPERFAMILY	Protein kinase-like (PK-like)	326	612	IPR011009	-
	Pvu8g0596	672	Gene3D	Transferase(Phosphotransferase) domain 1	418	619	-	-
	Pvu8g0596	672	Pfam	Salt stress response/antifungal	38	132	IPR002902	-
	Pvu8g0596	672	Pfam	Salt stress response/antifungal	152	245	IPR002902	-
	Pvu8g0596	672	ProSiteProfiles	Protein kinase domain profile.	342	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu8g0596	672	MobiDBLite	consensus disorder prediction	638	665	-	-
	Pvu8g0596	672	Gene3D	Phosphorylase Kinase; domain 1	308	417	-	-
	Pvu8g0596	672	ProSiteProfiles	Gnk2-homologous domain profile.	32	135	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g0596	Pvu-Chr8	5237544	5246176	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu8g0596	10	672	Receptor kinase-like Gene Family	AT4G21410	48.116	0.0	603

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pvu8g0596		PK_Tyr_Ser-Thr	1.2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g0596	-		-	pvu:PHAVU_008G058700g	1092.41