Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0581 ATGTCCCCTTCCATTCCCTCCCCTCACTTCACCCACCTTGGCCTTGGCTACTCCATCGCCATAGCCCTTGCCTTTCTCTTCCTCCTCTCCACCCTCCTCCTCTCCTCCTACCTCTGCTGCCGCGCCACCCGACACCGCAACCAGACAACCGCCGTCGCAACCGCCGCCGCCAACCCCTCCGACGGGGTTGTCCTGCCACGGGTCATCTTCGTGGCGGAGGACGATGAGGAGGACGAGGAGGCCAGCGTGGCGCTGGGGCTGGACCAGAGCGTGATTAATTCCTACCCCAGGTTCCAGTTCGACAGGGGCAGCGCGCGGAATAGTAACGGCAATAACAACACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCCGAGTGCCGCCATTTCTTCCACCTCTGCTGCCTCGATTCCTGGCTCAGACTCAGAGGCTCCTGCCCCGTTTGCCGCAACTCCCCGCTCCCGACGCCGCTCTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCAGTACGCCGCCGATAGAAGGCGAAGTAGGTGA 561 0.6239 MSPSIPSPHFTHLGLGYSIAIALAFLFLLSTLLLSSYLCCRATRHRNQTTAVATAAANPSDGVVLPRVIFVAEDDEEDEEASVALGLDQSVINSYPRFQFDRGSARNSNGNNNTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRSR* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0581 186 SUPERFAMILY RING/U-box 114 162 - -
Pvu8g0581 186 Pfam Ring finger domain 113 157 IPR001841 -
Pvu8g0581 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 161 IPR013083 -
Pvu8g0581 186 PANTHER RING-H2 FINGER PROTEIN ATL67 7 184 - -
Pvu8g0581 186 SMART ring_2 115 156 IPR001841 -
Pvu8g0581 186 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pvu8g0581 186 PANTHER RING-H2 FINGER PROTEIN ATL67 7 184 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0581 Pvu-Chr8 5094981 5096184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0581 1 176 C3H Transcription Factor Family AT5G07040 44.068 2.40e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0581 - - gmx:100793332 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0581 8 5094981 5096184 Pvu8g0581 8 5094981 5096184 ECH
Pvu8g0581 8 5094981 5096184 Pvu10g1096 10 36433815 36434387 PCT