Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0580 ATGTCGTTGTTGTCTCCTTCTCCCTCCGTCGTCTACAACGGGCCACCCATGAACTCCAACAACGCTGGATTGGACATATTCACCAAGGTCTTCCTATTGATCCTCTTTCTGTCTCTCTTCATTCGTGTCTGTTACGTGTACATGAGCCTGCGACGCGACCAAGGTGCCAACAACGACAACATAAGCGACAGCATCGCATCCATGATCCATAACGATCAAAACAATAACAACCTCACAGGGCTACCCTTTGATGTCGTGAAGTCGTACCACACTTTCCCTTACAGCAAAACCAATAGTGTGGCAACGATGTGCGACCATGATTCCACCTGCGCCATATGTATTGAGGATTACGAGGAATCGGAGATGCTGAGGATGATGCCGCAGTGCCGCCACTACTTTCACCGAGATTGCGTTGACGCCTGGTTGAAGGTCAATGCCACGTGTCCCGTTTGTAGGAACTCGCTCAAGGAAACTAGAAGCAATAATGATAACAATATTAATAACAATGGCGGCAATGCCTTTGAACGTGTTTAA 534 0.4775 MSLLSPSPSVVYNGPPMNSNNAGLDIFTKVFLLILFLSLFIRVCYVYMSLRRDQGANNDNISDSIASMIHNDQNNNNLTGLPFDVVKSYHTFPYSKTNSVATMCDHDSTCAICIEDYEESEMLRMMPQCRHYFHRDCVDAWLKVNATCPVCRNSLKETRSNNDNNINNNGGNAFERV* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0580 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 158 IPR013083 -
Pvu8g0580 177 Pfam Ring finger domain 109 152 IPR001841 -
Pvu8g0580 177 SUPERFAMILY RING/U-box 103 162 - -
Pvu8g0580 177 SMART ring_2 110 151 IPR001841 -
Pvu8g0580 177 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 8 167 - -
Pvu8g0580 177 PANTHER RING-H2 FINGER PROTEIN ATL67 8 167 IPR044289 GO:0016567|GO:0016740
Pvu8g0580 177 CDD RING-H2_PA-TM-RING 109 152 - -
Pvu8g0580 177 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0580 Pvu-Chr8 5084184 5084717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0580 24 164 Rapid Response to Elicitors AT3G05200 30.496 8.87e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0580 - - vun:114182932 256.529