Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0578 ATGGAGCTTCTTCACAACCTCAACACTCTCACTACAATTCTTCTTCTATGCATGTTCCCTCACTCACTCAAGTGCCAACAAGCATACCTCAATGCCACTGTCTATGACTGTTCTGACAACCCTTCTGCACCAAAAGGGTACCTTTGCAATGGCCTTCAAAAGTCATGCACTTCCTTCTTACTTTTCAGGTCAAAACCACCCTATGATAGCCCTGAAAAAATTGCCTACCTTCTTGGCTCCGAGGCATCTACCATAGCCTCAATCAACAAGATCTCAAGAAATGAGAAGATTGCTTCCAACAAGACAATCATTGTTCCTGTTTTCTGTTCATGTTCAGGAAACATCTACCAGCATAACACACCTTACACTGCCAGCAAGAATGACACCTATTTTCAGTTGGTAAAAGAAACCTTCCAAGGCCTTACTACCTGTCAGGCAATGATGGGTCAGAATTACTATGCAGCTACCAAAATTGAAATTGGTGCTGAGCTCAGAGTTCCGTTGTTATGTGCTTGTCCAACTGAAAATCAAACAGCAAGAGGGATCACCTCCTTGCTGGTTTACTTGGTGAACTATGGTGACACTATTAAGTCCATAGCAAAGGCTTATGGTGTGGAAGAACAAAGTATACTTGAGGCCAATGAGTTGGTTGTGCCACAAAGTGAAAATAGCAGAATGACTCTCCTTTCCTTGACACCTCTTTTAGTTCCTCTAATAGGGAAGAGCTGCAAAGAGAACCCAGATAAATTCTATTGTAAATGTTATCAAGCACCAGATAGAAGCACCAAGGGGCCCTTCTGTGATGAATCTGATGATCAGAAATTCCCTGCCAAGTTGCTAGCCGCTTTAGGAGCAGGACTTGGCGTAGGCTTTCTCTGTTTGTTTCTTTTGGGGTACAAATCATATCAATATATACAGAAAAAGAGAGAAAGTATCCGAAAGGAAAACCTATTCAGGCAAAATGGTGGCTACTTGTTACAGGAGAAGCTCTCATCTTACGGAAATGGAGAAATGGCAAAGCTTTTTAGAGCTGAGGAACTACAAAGAGCAACAGATAACTACAACAGGAGTAGGTTTCTTGGTCAGGGTGGCTATGGCACAGTGTACAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAAAGGTCCAAAGAAATTGAAAGGAACCAGATAGATACTTTTGTGAATGAAGTGGTGATTCTATCCCAGATCAACCACAGGAACATTGTCAAACTATTAGGTTGTTGTCTCGAGACAGAAACTCCTTTACTAGTCTATGAATTCATTTCCAATGGAACACTCTCTCACCATATCCACAGGAGAGACAATGAACCCTCCCTTTCATGGGAGAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCTATTCCCATTTTTCATAGAGACATCAAACCTACCAACGTGCTTTTAGACAGCAACTTCAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAGTGCCACAAGACAAGACTCACTTGACCACAGCTGTAGGAGGAACTTTTGGGTACATAGACCCTGAATATTTTCAGTCTAGTAAGTTTTCAGATAAAAGTGATGTGTATAGTTTTGGGGTTGTGCTAGTAGAGCTCATAAGTGGGAGAAAGCCAATTTCATTCTTAGAGGAAGATGAGGGTCAGAATCTGATTGCACAGTTTCTTTCTCTGATGAAGGAGAACCAAGTTTATGAAATTTTAGATGGAAGGGTAGCTAAGGAAGCAAGGAAAGATGACATTGTTGCCATTGCAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGAAGGAGGTTTCACTGGAACTAGAAGCATTGAGAAAGGTGCAAAGTTCCTTACAGATCAACCATGATCATGAGCACAAAACTAGTGATATGGTTGAAGAGTGCACAGAGGAAAGCATGTCACTGTCTTTACAACTAGAATCTACATCCTTCTAG 2004 0.4152 MELLHNLNTLTTILLLCMFPHSLKCQQAYLNATVYDCSDNPSAPKGYLCNGLQKSCTSFLLFRSKPPYDSPEKIAYLLGSEASTIASINKISRNEKIASNKTIIVPVFCSCSGNIYQHNTPYTASKNDTYFQLVKETFQGLTTCQAMMGQNYYAATKIEIGAELRVPLLCACPTENQTARGITSLLVYLVNYGDTIKSIAKAYGVEEQSILEANELVVPQSENSRMTLLSLTPLLVPLIGKSCKENPDKFYCKCYQAPDRSTKGPFCDESDDQKFPAKLLAALGAGLGVGFLCLFLLGYKSYQYIQKKRESIRKENLFRQNGGYLLQEKLSSYGNGEMAKLFRAEELQRATDNYNRSRFLGQGGYGTVYKGMLPDGTIVAVKRSKEIERNQIDTFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFISNGTLSHHIHRRDNEPSLSWESRLRIACEVAGAVAYMHFAASIPIFHRDIKPTNVLLDSNFSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYIDPEYFQSSKFSDKSDVYSFGVVLVELISGRKPISFLEEDEGQNLIAQFLSLMKENQVYEILDGRVAKEARKDDIVAIANLAMRCLRLNGKKRPTMKEVSLELEALRKVQSSLQINHDHEHKTSDMVEECTEESMSLSLQLESTSF* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0578 667 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Pvu8g0578 667 ProSiteProfiles LysM domain profile. 186 230 IPR018392 -
Pvu8g0578 667 Gene3D Phosphorylase Kinase; domain 1 325 429 - -
Pvu8g0578 667 SMART serkin_6 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g0578 667 Pfam Protein tyrosine and serine/threonine kinase 357 622 IPR001245 GO:0004672|GO:0006468
Pvu8g0578 667 CDD STKc_IRAK 360 627 - -
Pvu8g0578 667 Pfam LysM domain 188 219 IPR018392 -
Pvu8g0578 667 PANTHER LYSM TYPE RECEPTOR KINASE 26 652 - -
Pvu8g0578 667 Gene3D Transferase(Phosphotransferase) domain 1 430 653 - -
Pvu8g0578 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Pvu8g0578 667 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 652 IPR045274 GO:0007166
Pvu8g0578 667 ProSiteProfiles Protein kinase domain profile. 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g0578 667 Gene3D LysM domain 186 226 IPR036779 -
Pvu8g0578 667 SUPERFAMILY Protein kinase-like (PK-like) 338 624 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0578 Pvu-Chr8 5069201 5072054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0578 274 628 Receptor kinase-like Gene Family AT1G16130 57.143 5.59e-141 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Pvu8g0578 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0578 - - gmx:100795455 1164.06