Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0499 ATGCCTCCGAGGGTAGTGAAGAGAGGCGCGGCGAAGAGGGCATCGAGAGGATCCTCGAAGGCTGCACTTGAGAACCAGCGTGAGCCTGAAACTGCGGAAGTGGGGGAGAAAAATCATGCACAAAATTCTGCTGCTGATGTTGGAGTGGAAGAGAAACACGTTGATGTGGACCAAGAACCTCCGGAAGCTCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGGTTAAGGAGTCTTTAGATGAATATGAAAAAGGTGAACATTTAGATTTAGAGGATAATTATCCTGAGTATGAACCAGAGGAGTATGGTGGTGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGGTCAGGATGAGGCAGATGAACTAGAGGAAGAACCTGATGAGATAATAGGTGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGGAGAACATGCTGGTGAGGAGCATGTGCAGGTGCCTGATGTGGAAGAAGAGGAACACCGTGAAGTTGTAAAGGAGAGGCGAAAGCGTAAGGAATTTGAAGTATTTGTGGGGGGACTAGATAAGGATGCTACTGAGCATGATCTGAAGAAGGTTTTCAGCAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGACTAGAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTCGAGCAAGCGAAAAGAGCTGTGGTGGAGCTAAAAAATCCTGTGATTAATGGTAAACAGTGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACCTTGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTGAAACATTATGGAGTAGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACCAGTGAGGGGATGAACCGAGGATTTGCATTTTTGGAGTTTTCATCTCGTTCAGATGCTAAGGAAGCCTACAGGCGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCTGACTCCTTCATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCATCATGGGATGAAGATTATGTCCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTCGGAACATGCCAGCTGCTCGCAGGAAGAACTATGGATTTGTTACATTTAGTACACATGCTGATGCTGTGGAATGTGCTGATAGCATTACTAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCAAGGCCTCTTTCGAAACCTCTTCAGAGAGGCCGTGGGAAACATAATAATCATGGGGACTTTCGTCCTGGTCGCAATTCTGGAAGATTGCCAAGGCCTTCACGGAGTCGACCCACTCCACGTAGTTATCCTCCTGCCCGTGTGGTTAGAGGCATTGGAAATCGTGCTCCACCAGTTAGACCTGTTAGTGTGAGAAGTAGACGTCCTGTCACATCCATGCTAGAAAGAGCCAGGCCAGTTGCTCCTCCAGCTAGAACCTATGACAGGAGATTGACTGCTCCTGCATATTCAAAAAGTGGCATGAAAAGAGACTACAGTCGACGTGAGGATCTACCACCCCCAAGAGGTAGAGTTGCTGCAGATTATGGGTCTAGGGTAGCCTCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGATTCTGACTACCCTGAGCTACATAGAAGTACATCTCGTGCTGCTCCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCATCCTCCTCCCCATCTAAGTTATCGAGAAGGACGCCCACGTGATTATGAAACCATAGTTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCAACGGTATGATACTGGTGCCCGCCAATCAAGATCTCGTTTAGATTATGAATATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTGGGATATAGTGGCAGCAGAAGTTCGATTTCTAATCAAGAATTACATGGGACATATGGCAGTCGGCAGGGCATGAGTTATGGTGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACACATCAAATTATGGTGGTGATTATGTATCGCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCCATGTATTCAGGTAGAGGTGTGGGTGGTGGTAGCAGCAGCTATATGGGTGGAGGTGGCTCTGGGTCTTATTATTGA 2319 0.4502 MPPRVVKRGAAKRASRGSSKAALENQREPETAEVGEKNHAQNSAADVGVEEKHVDVDQEPPEAPNGSAKVENNEEEVKESLDEYEKGEHLDLEDNYPEYEPEEYGGVDYDEKEIEQDEGQDEADELEEEPDEIIGEEGDTGDEEVEYVYEEVEDDDDGEHAGEEHVQVPDVEEEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFSKVGVVTEVRLMINPQTRRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTSEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHADAVECADSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKHNNHGDFRPGRNSGRLPRPSRSRPTPRSYPPARVVRGIGNRAPPVRPVSVRSRRPVTSMLERARPVAPPARTYDRRLTAPAYSKSGMKRDYSRREDLPPPRGRVAADYGSRVASQRHTSYRDYPARDSDYPELHRSTSRAAPKRGYVDDGYGQRFERHPPPHLSYREGRPRDYETIVGSKRPYTAIDDVPQRYDTGARQSRSRLDYEYGGSASQYGDAYGDRLGRSSLGYSGSRSSISNQELHGTYGSRQGMSYGGGSFGGSDGGMYTSNYGGDYVSRGSDVGGRSYSSMYSGRGVGGGSSSYMGGGGSGSYY* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0499 772 Gene3D - 358 477 IPR012677 -
Pvu8g0499 772 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
Pvu8g0499 772 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 772 - -
Pvu8g0499 772 MobiDBLite consensus disorder prediction 1 143 - -
Pvu8g0499 772 MobiDBLite consensus disorder prediction 608 627 - -
Pvu8g0499 772 PANTHER RNA RECOGNITION MOTIF 1 772 - -
Pvu8g0499 772 SMART rrm1_1 190 263 IPR000504 GO:0003723
Pvu8g0499 772 SMART rrm1_1 367 442 IPR000504 GO:0003723
Pvu8g0499 772 SMART rrm1_1 270 349 IPR000504 GO:0003723
Pvu8g0499 772 MobiDBLite consensus disorder prediction 546 560 - -
Pvu8g0499 772 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 259 IPR000504 GO:0003723
Pvu8g0499 772 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 337 IPR000504 GO:0003723
Pvu8g0499 772 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 426 IPR000504 GO:0003723
Pvu8g0499 772 SUPERFAMILY RNA-binding domain, RBD 190 334 IPR035979 GO:0003676
Pvu8g0499 772 MobiDBLite consensus disorder prediction 742 772 - -
Pvu8g0499 772 CDD RRM_SF 368 423 - -
Pvu8g0499 772 MobiDBLite consensus disorder prediction 95 143 - -
Pvu8g0499 772 Coils Coil 67 87 - -
Pvu8g0499 772 MobiDBLite consensus disorder prediction 432 512 - -
Pvu8g0499 772 Gene3D - 269 352 IPR012677 -
Pvu8g0499 772 SUPERFAMILY RNA-binding domain, RBD 361 473 IPR035979 GO:0003676
Pvu8g0499 772 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 353 IPR000504 GO:0003723
Pvu8g0499 772 MobiDBLite consensus disorder prediction 579 601 - -
Pvu8g0499 772 MobiDBLite consensus disorder prediction 69 94 - -
Pvu8g0499 772 Gene3D - 136 264 IPR012677 -
Pvu8g0499 772 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 448 IPR000504 GO:0003723
Pvu8g0499 772 MobiDBLite consensus disorder prediction 544 627 - -
Pvu8g0499 772 Coils Coil 109 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0499 Pvu-Chr8 4320303 4326326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0499 184 452 Eukaryotic Initiation Factors Gene Family AT1G49760 23.856 1.10e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0499 - - gmx:100811387 1074.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0464 10 6752985 6758675 Pvu8g0499 8 4320303 4326326 PCT