Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0488 AGTTATTACCGTTGCACCCACAACAACTGCAGGGTGAAGAAGAGGGTTGAACGACTCTCAGAAGATTGTCGTATGGTGATAACCACCTACGAAGGTAGACACAATCACTCTCCTTGCGAGGACTCAAATTCATCGGAGCATGAATGCTTTACCTCTTTCTAG 162 0.4568 SYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCEDSNSSEHECFTSF* 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0488 53 Gene3D WRKY domain 1 39 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu8g0488 53 SUPERFAMILY WRKY DNA-binding domain 1 37 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu8g0488 53 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 51 IPR044810 GO:0003700
Pvu8g0488 53 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 1 51 - -
Pvu8g0488 53 SMART WRKY_cls 1 38 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu8g0488 53 MobiDBLite consensus disorder prediction 34 53 - -
Pvu8g0488 53 Pfam WRKY DNA -binding domain 1 36 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu8g0488 53 ProSiteProfiles WRKY domain profile. 1 36 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0488 Pvu-Chr8 4250703 4251105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0488 1 53 WRKY Transcription Factor Family AT2G44745 83.019 8.86e-29 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu8g0488 WRKY 6.7e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0488 - - pop:7483802 120.938