Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0472 ATGAAAGCTCCGCACCAAGTTGTTGTAACAAACAACAACAAATCTATCTCCAAATCTGAGATGGATACAGAATTTGATATGATATTTTCGGAGACTATAGAACATTACATGGTTGACGATGAAGCATGTGGTTTGAAGAACGATGTTTTGGTCTCAAATGAGAGTTCTTTGTCTGAGAATGGTGGTGGTAAAGTAGAAGAGGAAGTTCCGAGAGGGTCGAGGTACAGAGGAGTGAGGCGTAGGGCACATGGAAAGTTTGCTGCAGAGATAAAAGATCCAAACAGAAGTAATAGGATTTGGCTTGGGACTTACCACACTGAAGAAGAAGCTGCTTTGGCTTATGACAATGCAGTTTTCAAGATCAGAGGCTCCAAAGCCAAGCTTAATTTTCCTCACCTCATTCCACCGTTGGATGCATCAACCATCCACGTGGCTGACCCTCCTTCTTCGTCATCCACACCTGAGGATCGTTCTGAAGGGTCCAGGAAAAGGAAGGGAGTAGCTGGTTTGCTCAATAAATTAGCACGTGAAAGAAACAGAATTTGA 546 0.4322 MKAPHQVVVTNNNKSISKSEMDTEFDMIFSETIEHYMVDDEACGLKNDVLVSNESSLSENGGGKVEEEVPRGSRYRGVRRRAHGKFAAEIKDPNRSNRIWLGTYHTEEEAALAYDNAVFKIRGSKAKLNFPHLIPPLDASTIHVADPPSSSSTPEDRSEGSRKRKGVAGLLNKLARERNRI* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0472 181 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Pvu8g0472 181 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 25 179 - -
Pvu8g0472 181 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Pvu8g0472 181 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Pvu8g0472 181 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Pvu8g0472 181 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Pvu8g0472 181 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Pvu8g0472 181 PANTHER DNA-BINDING DOMAIN 25 179 IPR044808 GO:0003700|GO:0009873
Pvu8g0472 181 Gene3D AP2/ERF domain 73 132 IPR036955 GO:0003700|GO:0006355
Pvu8g0472 181 MobiDBLite consensus disorder prediction 139 171 - -
Pvu8g0472 181 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0472 Pvu-Chr8 4010611 4011156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0472 71 134 AP2-EREBP Transcription Factor Family AT2G44840 69.231 1.83e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu8g0472 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0472 K09286 - pvu:PHAVU_008G046500g 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0526 10 8042080 8042795 Pvu8g0472 8 4010611 4011156 PCT