Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0471 ATGAGTTCAACCACCACGGATTCCGACTTTGCGTTCTTGGAATCTGTTCGACAATACCTACTTGGACACGATTCCATCAACCTCATGCCTGCAACAACCCACCAAGTTGCTTCTCATGATCCACTTTCAAACCCTAAATGCAATGGTGATCTCGAGAACGTTATTTTCCGCAGCGAGGATGCAACTGCTGCGGTGGCGCGTCATGTCCACGCACCACAGACGTGGAAGCATTACCGAGGTGTTAGGCGTAGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGGGATCCAAAGAAGAACGGAGCTAGGGTTTGGCTTGGAACTTTTGACACTGAAAAGAAAGCAGCTTTGGCTTACGACAAAGCAGCTTTCAAGATGCGTGGTCAAAAAGCTAAGTTGAATTTTCCTCATCTTATAGATTCTGATAACTGCGATACAGTGTCAGAACCGGTGATGGAAACAGCTTCTGAGAGGGAGTTGTCACAAAGTTTTCAACCGTCCTCACCATCATCGTTGTGCTCGGATGATAGCTCAGAGTCACAAGGGACAAAGAGGAGGAAGAAGAACCTCACTGATCTATTGAATAAGTTAGCCAAGAACAGAAGCCAAGCCAAGGTTTCATATTGA 624 0.4712 MSSTTTDSDFAFLESVRQYLLGHDSINLMPATTHQVASHDPLSNPKCNGDLENVIFRSEDATAAVARHVHAPQTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTFDTEKKAALAYDKAAFKMRGQKAKLNFPHLIDSDNCDTVSEPVMETASERELSQSFQPSSPSSLCSDDSSESQGTKRRKKNLTDLLNKLAKNRSQAKVSY* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0471 207 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Pvu8g0471 207 PRINTS Ethylene responsive element binding protein signature 117 137 IPR001471 GO:0003700|GO:0006355
Pvu8g0471 207 PANTHER DNA-BINDING DOMAIN 1 202 IPR044808 GO:0003700|GO:0009873
Pvu8g0471 207 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Pvu8g0471 207 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Pvu8g0471 207 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Pvu8g0471 207 MobiDBLite consensus disorder prediction 151 188 - -
Pvu8g0471 207 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 202 - -
Pvu8g0471 207 MobiDBLite consensus disorder prediction 151 177 - -
Pvu8g0471 207 CDD AP2 76 137 IPR001471 GO:0003700|GO:0006355
Pvu8g0471 207 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Pvu8g0471 207 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0471 Pvu-Chr8 4004959 4005582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0471 63 179 AP2-EREBP Transcription Factor Family AT2G44840 59.322 5.93e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu8g0471 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0471 K09286 - gmx:548037 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0471 8 4004959 4005582 Pvu8g0471 8 4004959 4005582 ECH
Pvu10g0527 10 8078193 8078828 Pvu8g0471 8 4004959 4005582 PCT