Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0458 ATGGCTGAAAAAGATGATGGGGTTGGGTTGAGTTTGAGTCTGAGTCTGGGAGTGAATCAACAACCTTTGAAGGTGAATCACATGCAGCATCCTCAACACCAACAACAACCCCAACCTGGTCCCATAAATCACAACACAACTCTCTTTGCTGATTTGTTTCAGTTACCAGATAGGAGCTCCGATGTGATACGAGGAATTGAAGTGAAATCGACGGCGTACTGCGAGGAAGACAACGGCATTTCCTCACCGAACAGCGTGGTGTCGAGCGTTAGCGGCAGCAAGCGGAACGAGAGGGACGATGATAATGCTGCGATGGTTGCCGGAGAGAGGACCTCGTGCTCGCGGGGGAGCGATGATGACGATGGCGGCGGTGGAGACGGTGGAGACGGCGATGGTGGAAGAAAGAAACTGAGGCTGACTAAAGAACAGTCCATGGTTTTGGAAGAAACGTTCAAGGAGCATAACACGCTCAATCCGAAACGAAAGCAAACTTTAGCAGAGGAGTTGAATCTGAAGCCTAGACAAGTAGAAGTGTGGTTTCAGAACAGAAGGGCAAGAACTAAGTTGAAGCAAACTGAAGTGGATTGTGATTTCTTGAAGAAATGCTGTGAGAGTCTAACTGAAGATAATAGAAGATTGCAGAAGGAGGTCCAAGAGCTTAGGGCATTGAAATCATCCCCACAAATGTACATGCACATGAACCCTCCCACCACTCTCACAATGTGCCCCTCTTGTGAGCGTGGTCACTCCTCTTCATCCTCCTCTCCTGCCACCGTCCATTCGTCGGCGCCGACTACTCGCAAACTGTTTGGGGCAAACATCCGGCGGCCGGTGGCGGTCAACACTTGGCCATTTGATGGCTCAATTCCTCGGCAATAA 879 0.4994 MAEKDDGVGLSLSLSLGVNQQPLKVNHMQHPQHQQQPQPGPINHNTTLFADLFQLPDRSSDVIRGIEVKSTAYCEEDNGISSPNSVVSSVSGSKRNERDDDNAAMVAGERTSCSRGSDDDDGGGGDGGDGDGGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQTLAEELNLKPRQVEVWFQNRRARTKLKQTEVDCDFLKKCCESLTEDNRRLQKEVQELRALKSSPQMYMHMNPPTTLTMCPSCERGHSSSSSSPATVHSSAPTTRKLFGANIRRPVAVNTWPFDGSIPRQ* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0458 292 MobiDBLite consensus disorder prediction 76 92 - -
Pvu8g0458 292 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Pvu8g0458 292 CDD homeodomain 134 191 IPR001356 GO:0003677
Pvu8g0458 292 SUPERFAMILY Homeodomain-like 120 191 IPR009057 -
Pvu8g0458 292 Pfam HD-ZIP protein N terminus 1 99 IPR006712 GO:0005634
Pvu8g0458 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 4 283 - -
Pvu8g0458 292 MobiDBLite consensus disorder prediction 113 135 - -
Pvu8g0458 292 PANTHER - 4 283 - -
Pvu8g0458 292 SMART HOX_1 132 194 IPR001356 GO:0003677
Pvu8g0458 292 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Pvu8g0458 292 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Pvu8g0458 292 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Pvu8g0458 292 Gene3D - 122 193 - -
Pvu8g0458 292 MobiDBLite consensus disorder prediction 76 135 - -
Pvu8g0458 292 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Pvu8g0458 292 MobiDBLite consensus disorder prediction 26 45 - -
Pvu8g0458 292 MobiDBLite consensus disorder prediction 245 264 - -
Pvu8g0458 292 Coils Coil 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0458 Pvu-Chr8 3914630 3917765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0458 26 247 Homeobox Transcription Factor Family AT3G60390 57.377 9.55e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu8g0458 HD-ZIP_N 6.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0458 K09338 - gmx:100819624 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0458 8 3914630 3917765 Pvu8g0458 8 3914630 3917765 ECH
Pvu10g0542 10 8254147 8257046 Pvu8g0458 8 3914630 3917765 PCT