Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0443 ATGGTAGGAAGTTCAAGCAAGGTTAGCATTATTATCTTGGTCGCTTTTGCCATTACTATTCCATGCCTTGAGGGTGGCATTGGTGAGTTTGACGACTTTCTCAAAGGACAAGCTCTCGAGGCCCATGAAATCGCTCTCGAATCCTACGTCCCTGACCCTGTAAACATGACAGACGACCTTAATATAAATGTTCACGGGGCTTTGACGGAGGTGTTCAAGGAGGAATCAAACCACACAAGGAGGGAACTCAAGCAGAAATACGGTGGACCATGCTTGGCCCTAAACCCAATCGATCGTTGTTGGAGGTGCAAGAAAGGCTGGGCCAAAAACCGTTTTAAGTTAGCCCATTGCGCCAAGGGTTTTGGAAGAAAGGCCACCGGAGGACTCGAAGGCAAAATGTACATTGTCAACGATCCATCCGACGATGATCCTATAAACCCTAAGCCCGGAACCCTAAGGTTCGGTGTACTCCAAAAGGAGCCTCTGTGGATCATATTTGCACGAAGCATGATCATCAAGTTGAACTACGAGTTGTTGATTTCTTCTGACAAAACCATCGACGGTCGCGGGGCGAATGTGATGATCAAGGATGGTTCAGGCCTTACCATGCAGTTTGTGAACAACGTTATTATCCATGGGCTTAGATTACAAAATATCAAGTCCACGCCAGGTGGCACGATTAGGGACTCTTGGAACCATGTAGGAATAAGAACCAAGGCTGATGGGGATGCCATCTCCATCTTTGGCTCTTCAAACATTTGGATCGATCATCTTTCACTCTCTGATTGTGAGGATGGTCTCGTGGACATTATCCAGGGTTCCACTGGAATCACCATCTCAAATTGTCACATGACAAAACATAACGATGTGATGTTATTTGGAGCCAGCGACACCTTCACAGGGGACAAGATAATGCAGGTGACGGTGGCATTCAACCATTTCGGGCAGGGTCTGATTCAGAGAATGCCCAGATGCAGATGGGGGTTCTTCCACGTGTTGAATAACGATTACACTCACTGGCTGATGTATGCAATTGGTGGGAGCTCAGCGCCGACGATTCTGAGCCAAGGAAACCGGTTCATTGCACCAAACAACAACGCTGCGAAGGAAGTGACGCACAGGGACTATGCAGAACCTTCTGTGTGGGAAAAATGGCAATGGAGATCAGAGAACGATGTGTTCATGAATGGGGCTAACTTTGTTCAGTCAGGGCCACCTCTTGGGAAGCTTCCATTCAACAAAGGGTTCCTCATGAAACCTAGACATGGCTCACAGGCCAACAGGCTAACACGCTTTGCTGGAGCCCTCAATTGCAAGGCAAATAGCCCTTGCTAG 1335 0.4787 MVGSSSKVSIIILVAFAITIPCLEGGIGEFDDFLKGQALEAHEIALESYVPDPVNMTDDLNINVHGALTEVFKEESNHTRRELKQKYGGPCLALNPIDRCWRCKKGWAKNRFKLAHCAKGFGRKATGGLEGKMYIVNDPSDDDPINPKPGTLRFGVLQKEPLWIIFARSMIIKLNYELLISSDKTIDGRGANVMIKDGSGLTMQFVNNVIIHGLRLQNIKSTPGGTIRDSWNHVGIRTKADGDAISIFGSSNIWIDHLSLSDCEDGLVDIIQGSTGITISNCHMTKHNDVMLFGASDTFTGDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSAPTILSQGNRFIAPNNNAAKEVTHRDYAEPSVWEKWQWRSENDVFMNGANFVQSGPPLGKLPFNKGFLMKPRHGSQANRLTRFAGALNCKANSPC* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0443 444 PANTHER PECTATE LYASE 6 444 - -
Pvu8g0443 444 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Pvu8g0443 444 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Pvu8g0443 444 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Pvu8g0443 444 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Pvu8g0443 444 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Pvu8g0443 444 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Pvu8g0443 444 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Pvu8g0443 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Pvu8g0443 444 SUPERFAMILY Pectin lyase-like 95 435 IPR011050 -
Pvu8g0443 444 Pfam Pectate lyase, N terminus 27 83 IPR007524 GO:0030570
Pvu8g0443 444 PANTHER PECTATE LYASE 18-RELATED 6 444 IPR045032 GO:0030570
Pvu8g0443 444 SMART amb_all 169 366 IPR002022 -
Pvu8g0443 444 Pfam Pectate lyase 179 360 IPR002022 -
Pvu8g0443 444 Gene3D - 94 437 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0443 Pvu-Chr8 3752195 3754070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0443 10 444 Polysaccharide Lyase AT5G15110 52.371 9.39e-179 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0443 K01728 - gmx:100780236 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0443 8 3752195 3754070 Pvu8g0443 8 3752195 3754070 ECH
Pvu8g0443 8 3752195 3754070 Pvu9g1960 9 28158493 28160576 ECH
Pvu2g0682 2 7639894 7642692 Pvu8g0443 8 3752195 3754070 ECH