Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0422 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGAGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCGTATTGGTATCTTATATACAGGAACATGGTCCTGGCAATTGGAGAACTGTTCCTACCAAGACAGGTTTGTCAAGATGTAGTAAGAGTTGTAGACTTAGATGGACAAATTACCTCAGACCAGGAATCAAACGTGGGAACTTCACAGAACAAGAGGAGAAGATGATAATTCACCTTCAAGATCTTTTAGGAAATCGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACAGATAATGACATCAAGAACTATTGGAACACCCATTTGAGGAAGAAGGTGAAGAAGTTGTTTCAAACCGGCAATGAAGGCAGCTTGGGAGAAGGGTTTTCAGCCTCAAGGCAAATTCCTAGAGGACAGTGGGAAAGAAGGCTTCAAACTGATATCCAAATGGCAAAAAGAGCTCTCAGTGAAGCTCTCTCTCCAGAAAAGCCATCTTGTCTATCTGGATCAAACTCAAATCCTTCAGATAGTAGTAGTTCCTTCTCTTCCACCAAACCATCTCAATCTTTGTGCTATGCTTCCAGTGCTGAGAACATAGCTCGCATGTTGAAGGGTTGGATGAAAAGTCCACCAAAGTCCTCAAGAACCAACTCATCTGTGACTCAGAACTCCTTCAACAACTTAGTGACAGCAGGTGCTGATACTGCTTCTAGTGGAGCAGAGGGACTGAGCAGTGTTGAATTGTCTGAGAATTTTGAATCCCTGTTTGAGTTTCATCAGTCTTTGGAGTCCTCAGACTCTGATCAGTTCTCTCAGTCCTTTTCTCCGGAGGCCACTGTTTTGCAAGATGAAAGCAAACCTGATATTGGTGCAGAAATAATGCCATTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGCTTGCCAAGACAAAGTTGGTTCTGGTAATGTCAAATTTTTTTAA 975 0.4287 MGRPPCCDKEGVKKGPWTPEEDIVLVSYIQEHGPGNWRTVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKVKKLFQTGNEGSLGEGFSASRQIPRGQWERRLQTDIQMAKRALSEALSPEKPSCLSGSNSNPSDSSSSFSSTKPSQSLCYASSAENIARMLKGWMKSPPKSSRTNSSVTQNSFNNLVTAGADTASSGAEGLSSVELSENFESLFEFHQSLESSDSDQFSQSFSPEATVLQDESKPDIGAEIMPFSLLEKWLLDEAACQDKVGSGNVKFF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0422 324 CDD SANT 69 112 IPR001005 -
Pvu8g0422 324 Gene3D - 69 127 - -
Pvu8g0422 324 MobiDBLite consensus disorder prediction 161 190 - -
Pvu8g0422 324 CDD SANT 16 61 IPR001005 -
Pvu8g0422 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu8g0422 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pvu8g0422 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu8g0422 324 SMART sant 66 114 IPR001005 -
Pvu8g0422 324 SMART sant 13 63 IPR001005 -
Pvu8g0422 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu8g0422 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu8g0422 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 318 - -
Pvu8g0422 324 Gene3D - 13 66 - -
Pvu8g0422 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pvu8g0422 324 MobiDBLite consensus disorder prediction 166 190 - -
Pvu8g0422 324 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 318 - -
Pvu8g0422 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0422 Pvu-Chr8 3541372 3542877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0422 1 309 MYB Transcription Factor Family AT5G62470 52.408 4.11e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g0422 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0422 K09422 - gmx:780543 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0316 4 3031287 3033176 Pvu8g0422 8 3541372 3542877 PCT