Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0421 ATGAGTAGAGTGATTTTGAGAACACAGCCCCCTCGAGAGTGCCCTAGCAGTAACATGTTGACGATTGTGAGGAATGTACAACATGGAGAGTGTCAGAGGAATCACGCAGTTCATGTTGGAGGATTAGCTCAGGATGGTTGCATGGAGTTCATTCCAAGTGGAGCAGAAGAAACTGATGAAGCTATGATGTGTGCTGGATGTGGTTGCCACAGGAACTTCCATAGGAGGGAGATCCACATCCATGTTGTTTGTCACTGCCCTTCTCGAAATGGATAG 276 0.471 MSRVILRTQPPRECPSSNMLTIVRNVQHGECQRNHAVHVGGLAQDGCMEFIPSGAEETDEAMMCAGCGCHRNFHRREIHIHVVCHCPSRNG* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0421 91 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 28 77 IPR006456 -
Pvu8g0421 91 PANTHER MINI ZINC FINGER PROTEIN 2 21 88 - -
Pvu8g0421 91 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 29 78 IPR006456 -
Pvu8g0421 91 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 88 - -
Pvu8g0421 91 Pfam ZF-HD protein dimerisation region 26 78 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0421 Pvu-Chr8 3528175 3528450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0421 22 88 Zinc finger-homeobox gene family AT3G28917 61.765 4.91e-24 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu8g0421 ZF-HD_dimer 4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0421 - - pvu:PHAVU_008G041400g 202.216