Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0420 ATGGACATAACCCCAACAACAACGATAAACAACACCACTCCCAGTGCAACAACAAAATCCCCAGACCATGACACCGAAACACCCACCAGGATCAACACCCCCACCGCCACAAAAGCCTTGTCTTTCTCCAACGGGGTGCTCAAGCGCCACCATCACCACCACCACCACCACCACCACCCCATGTCCGCCGCCGTCACCTACAAAGAATGCCTCAAAAATCACGCTGCCAACTTGGGTGGCCACGCCTTAGATGGCTGCGGCGAGTTCATGCCGTCCCCCACAGCCACTGCTGCCGACCCCAGCTCCATTAAATGTGCAGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGATGAGCCGCCCATCGCATCCACCACGCACGTGATCGAGTACCAGCCGCACCATCGCCACCACCCACCGCCTCCGTTCCAGGCGGCAGTGGCGGCAAATCGAAGCCCGAATTCCGCATCCCCGCCGCCGATCTCCTCGTCTTACTACCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCTGGTCTCGCCGCTCCGCCGGAGAGCACGGCCGCACCCTCCACTGCGCTCACCAGAAAGCGCTTCAGAACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCATAAGTTCGCTGATAAAGTAGGGTGGAAGATGCAGAAGAGAGACGAAGATTTGGTTCACGAGTTTTGCAACGAGATTGGCGTGGATAGAAGCGTTCTCAAGGTTTGGATGCACAACAACAAAAACACCTTGGCCAAAAAAGATAATAATGTTAATATTACTAGCAATGATGATATTACTAATAATATTAATGATAATGATGCAAATGGAGCTGCCAAGGGTTTTGAGGACCCTAATAGCAGCATCGGTGGTGGTGCTGAAGATCGTGGTGAGGATCCGAGTCGCAATCACTTTGGTGGGGTGAACGTTGGTGGTGCTAACGGGTCTTCTTCTACTTCTTGA 981 0.5515 MDITPTTTINNTTPSATTKSPDHDTETPTRINTPTATKALSFSNGVLKRHHHHHHHHHHPMSAAVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPDEPPIASTTHVIEYQPHHRHHPPPPFQAAVAANRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSTALTRKRFRTKFSQEQKEKMHKFADKVGWKMQKRDEDLVHEFCNEIGVDRSVLKVWMHNNKNTLAKKDNNVNITSNDDITNNINDNDANGAAKGFEDPNSSIGGGAEDRGEDPSRNHFGGVNVGGANGSSSTS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0420 326 MobiDBLite consensus disorder prediction 135 165 - -
Pvu8g0420 326 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 118 IPR006456 -
Pvu8g0420 326 MobiDBLite consensus disorder prediction 1 36 - -
Pvu8g0420 326 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 118 IPR006456 -
Pvu8g0420 326 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 281 - -
Pvu8g0420 326 Pfam ZF-HD protein dimerisation region 65 119 IPR006456 -
Pvu8g0420 326 SUPERFAMILY Homeodomain-like 190 259 IPR009057 -
Pvu8g0420 326 MobiDBLite consensus disorder prediction 271 326 - -
Pvu8g0420 326 MobiDBLite consensus disorder prediction 150 164 - -
Pvu8g0420 326 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 281 - -
Pvu8g0420 326 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 198 255 IPR006455 -
Pvu8g0420 326 Gene3D - 186 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0420 Pvu-Chr8 3503662 3506099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0420 1 254 ZF-HD Transcription Factor Family AT5G15210 52.756 6.28e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu8g0420 ZF-HD_dimer 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0420 - - gmx:100789447 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0420 8 3503662 3506099 Pvu8g0420 8 3503662 3506099 ECH
Pvu4g0317 4 3089944 3091428 Pvu8g0420 8 3503662 3506099 PCT