Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0418 ATGAAGAGATACTCACATTTGTCACACTATAAAAGGACCCTTCATCATCCACTTCTACATAGCTCTCTCATATTAATTCTACCCAGCTCCACAACAATGGAAGGTAACACCCAAAACACGTTTACCTTCGTCACCAACACCATCGACGTTCCAAGTCCAAGCACCCCCGCGATATCACCCTCCCGTGGTTATCTTTCACTACTAGCACAGACTTACCCTCCTGGCTTTTCCAGAAAGGTGTTTGCGGAGGTTATAGGAACTTATCTTTTGGTGTTCGTGGGAAGTGGTTCTGCTGGTCTTAGTGTTATTGATGAGAGCAGAGTGTCGAAGCTTGCAGCTTCACTGGCAGCGGGGCTCATAGTCACAGTGTTGATTTACTCGATTGGACACATTTCTGGGGCACACATGAACCCTGCGGTTTCCCTTGCTTTTGCTGCGGTGAGGCATTTTCCGTGGCCACAGCTCCCGTTTTACGTGGCAGCTCAACTCACTGGATCCATTTCTGCTTCATACACATTGCGAGAGCTTTTCCAGCCATCAAATGAAATTGGAGGAACATCACCTGCTGGATCACATATTCAAGCACTAATCATGGAAATGGTGACAACTTACACCATGGTGTTCATTTCCATGGCCGTCGCCACAGACACAAACGCTACAGGACAACTATCAGGAGTAGCAGTAGGTTGTTCCGTTTCCATATCAAGCATTGTTGCCGGACCAATATCAGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAACTTCATCGTACAAGGGACTTTGGTTATATTTTGTTGGACCAATTACTGGGGCAATTTTAGCAGCATGGTCTTACAATGTGATTAGGGACACGGAACACCCTGGTTTTCCATTTTCACTATCCTCCCTTTCATTCAAGGCACGCAATAGAACTAGTGGAACCCAACAAGTTGGAAAAACCGACCACCAATGCTTGGTTTGA 975 0.4636 MKRYSHLSHYKRTLHHPLLHSSLILILPSSTTMEGNTQNTFTFVTNTIDVPSPSTPAISPSRGYLSLLAQTYPPGFSRKVFAEVIGTYLLVFVGSGSAGLSVIDESRVSKLAASLAAGLIVTVLIYSIGHISGAHMNPAVSLAFAAVRHFPWPQLPFYVAAQLTGSISASYTLRELFQPSNEIGGTSPAGSHIQALIMEMVTTYTMVFISMAVATDTNATGQLSGVAVGCSVSISSIVAGPISGGSMNPARTLGPAIATSSYKGLWLYFVGPITGAILAAWSYNVIRDTEHPGFPFSLSSLSFKARNRTSGTQQVGKTDHQCLV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0418 324 ProSitePatterns MIP family signature. 135 143 IPR022357 -
Pvu8g0418 324 Pfam Major intrinsic protein 76 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu8g0418 324 Gene3D Glycerol uptake facilitator protein. 66 292 IPR023271 -
Pvu8g0418 324 PANTHER AQUAPORIN NIP2-1 68 300 IPR034294 -
Pvu8g0418 324 CDD MIP 78 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu8g0418 324 PRINTS Major intrinsic protein family signature 78 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu8g0418 324 PRINTS Major intrinsic protein family signature 117 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu8g0418 324 PRINTS Major intrinsic protein family signature 154 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu8g0418 324 PRINTS Major intrinsic protein family signature 198 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu8g0418 324 PRINTS Major intrinsic protein family signature 229 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu8g0418 324 PRINTS Major intrinsic protein family signature 266 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu8g0418 324 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 68 300 - -
Pvu8g0418 324 SUPERFAMILY Aquaporin-like 72 292 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0418 Pvu-Chr8 3459248 3463174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0418 77 292 Major Intrinsic Protein MIP AT5G37820 47.926 5.57e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0418 K09874 - gmx:100788071 448.358