LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g0405	ATGGGCTGTGCGAGTTCGAAGAATGTTCTTGCCGGAGGCGATTCCACGTCCCCGGGGCTGCCCGTGTTGGCTTCGAGCTCACGGAAACGGTGCAATGGGAAGAGGCGAAACGGCGTCGTGGAGGCGCGTGAGGGGGACGACAGATTAGAGGAGACAAAGGAGTGGAAGAAGGGGAGCTTGAGAGGTCCAGTGTCGTTGAGGTTGTCGTGTAGGTTTGTGGAGGCTGAACAGAATGCTGCTGGGTGGCCACCTTGGCTTACCTCTGTTGCTGGGGAAGCCATTCAAGGGTGGGTCCCTCTCAAAGCCGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAGTGTATTCCAAGCACGTGAAGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTTCGTTTTGACAAATATCAAGCGGATAGCATTAGGTTCATGGCGAGAGAAATAATAATTCTTCGCACACTTGACCACCCAAACATCATGAAATTGGATGGTATAATTACTTCACAACATTCAAACAGCATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTAGCTTCTCCAGATATAAAGTTCACTGACGCACAGATTAAGTGTTACATGAGACAGTTATTAAGTGGAATTGAGCATTGTCATCTTCGAGGTATTATGCATCGAGACATTAAAGTATCTAATATACTAGTAAGCAATGAAGGTGTTCTCAAGATAGCAGATTTTGGATTAGCAAATACCCTTAGTCCAAATAACAAGCGACCCTTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAACTCTTGATGGGATCAACAACTTATGGAGTTTCGGTGGATCTATGGAGTGTGGGTTGTGTATTTGCTGAACTTTTTCTGGGGAGGCCCATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTCAAGCTTTGTGGATCTCCACCACAGGAGTACTGGAAAAAGAATAAGCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTAATTACGAAACCTCTCTTCAAGAGAGGTGTAAAGGTTTTCCTGCACCTGCTGTAAAACTACTCGAGACTTTACTTTCCATTGATCCCTCCAAGCGTGGGACTGCCTCCTCTGCACTCACGTCAGAGTATTTCAGAACCAAGCCATATGCCTGTGATCCATTACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCCAGAGATCGGGAAGATGCGAGCAGGAAAAAGGCTGCAGGTAAAGTGAGAGAGGCTGTAACATCAAAAAGGCACAGACGAGTCCACAAAGTTTCCCATGACCATATAAATTTCAACATGCCAGCTTTGAAAGAGAATAATTCTCAAAATGCTGGTACAGATGATGGTGGGGCACATGTTGCAAAAGTTAATATAGGAGCTTTGCATATAGAGCAACCAAAGCCTTCATGTGATGGAAAGTCTGAGGCTGCCCAAGTGGGGGATGGTTGCAATGAAAACAGTGTATACTCTGGACCAGCACCAGTCTCAGCATCCAGTGGCTTTACATGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCTGATTGTTCAAGAAGCAAAATCAGTGCTTTGGATCCAACCTTTGAAAAAGGCGCATATGATTTAACAAAACATAGGATAGAAGTTTCAGAAAGGAAACATAGTTTCAACACAAGGCATAAGGACAAGACTTCCACCTACGTATTGCCAATATACCATCCTCCTCGGATTCAACAAAAATCATTCGATGCAGCTGATACATACAACTCAAATTATTACATGGAATTCGATTTCACAGATAAATCGGATGCTCAGTTAGATCAGGGCCACAGAAAACATGGTGAGCCTGTGAAGCAATCAGCGCCAAAAATGATTTCATCAAATAAAAATGGTGAGTTGTTGCAGCGGAATGAAAATAATATGCGGCAATCTCTTCGTATATCAACCTTAGGAAGAGACCAATGA	2004	0.4401	MGCASSKNVLAGGDSTSPGLPVLASSSRKRCNGKRRNGVVEAREGDDRLEETKEWKKGSLRGPVSLRLSCRFVEAEQNAAGWPPWLTSVAGEAIQGWVPLKADSFERLDKIGQGTYSSVFQAREVETGRMVALKKVRFDKYQADSIRFMAREIIILRTLDHPNIMKLDGIITSQHSNSIYLVFEYMEHDLAGLVASPDIKFTDAQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVSNEGVLKIADFGLANTLSPNNKRPLTSRVVTLWYRPPELLMGSTTYGVSVDLWSVGCVFAELFLGRPILKGRTEVEQLHKIFKLCGSPPQEYWKKNKLPLATMFKPQTNYETSLQERCKGFPAPAVKLLETLLSIDPSKRGTASSALTSEYFRTKPYACDPLLLPKYPPSKEMDARDREDASRKKAAGKVREAVTSKRHRRVHKVSHDHINFNMPALKENNSQNAGTDDGGAHVAKVNIGALHIEQPKPSCDGKSEAAQVGDGCNENSVYSGPAPVSASSGFTWAKRRKPEASSILSDCSRSKISALDPTFEKGAYDLTKHRIEVSERKHSFNTRHKDKTSTYVLPIYHPPRIQQKSFDAADTYNSNYYMEFDFTDKSDAQLDQGHRKHGEPVKQSAPKMISSNKNGELLQRNENNMRQSLRISTLGRDQ*	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g0405	667	MobiDBLite	consensus disorder prediction	619	667	-	-
	Pvu8g0405	667	Coils	Coil	660	667	-	-
	Pvu8g0405	667	Gene3D	Phosphorylase Kinase; domain 1	92	187	-	-
	Pvu8g0405	667	ProSiteProfiles	Protein kinase domain profile.	105	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu8g0405	667	PANTHER	CYCLIN-DEPENDENT KINASE	47	562	-	-
	Pvu8g0405	667	SUPERFAMILY	Protein kinase-like (PK-like)	99	395	IPR011009	-
	Pvu8g0405	667	CDD	STKc_CDK9_like	105	389	-	-
	Pvu8g0405	667	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	225	237	IPR008271	GO:0004672\|GO:0006468
	Pvu8g0405	667	MobiDBLite	consensus disorder prediction	1	23	-	-
	Pvu8g0405	667	Pfam	Protein kinase domain	105	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu8g0405	667	ProSitePatterns	Protein kinases ATP-binding region signature.	111	134	IPR017441	GO:0005524
	Pvu8g0405	667	PANTHER	CELL DIVISION PROTEIN KINASE	47	562	-	-
	Pvu8g0405	667	Gene3D	Transferase(Phosphotransferase) domain 1	188	429	-	-
	Pvu8g0405	667	MobiDBLite	consensus disorder prediction	405	440	-	-
	Pvu8g0405	667	MobiDBLite	consensus disorder prediction	407	430	-	-
	Pvu8g0405	667	MobiDBLite	consensus disorder prediction	634	667	-	-
	Pvu8g0405	667	MobiDBLite	consensus disorder prediction	1	39	-	-
	Pvu8g0405	667	SMART	serkin_6	105	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g0405	Pvu-Chr8	3346306	3352482	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu8g0405	97	462	Core Cell Cycle Gene Families	AT5G10270	43.264	6.50e-107	332

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pvu8g0405		Pkinase	4.9e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g0405	-		-	gmx:100781059	1070.46