Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0400 ATGGCAAGGAAGAGAAAGGTTTCTGAAGAAGTTGAAGAGAGAAATCCATCAGAGGAAACCATGGCCTGGGATGAGGTGATGAAGGAAGCTGCTGCACTAGGAAGTGGCAGGAGATTGAGGAAGAGATTTGTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTAGCTGAGATAAAGGATACGATTCAGAAGATAAGAGTGTGGTTAGGCACCTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCCTTCTTCGAGGTGCCAACACTAGAACAAACTTCTGGCCTACTTCTCAATCTTCCTCAACTCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTCAAAGCAAGGAATAATAACACTAGAACAAACCCTTGCACTCTTTCTTCATCTTCCTCCTCCACATCTCTTTCAATCAACCAGCAACAAAGCCAACAAGAAGATGTACGTGGAGCTGAGTCAACATATTTCACATTGGATCAATTCTCAGATTTCCTTAATGACTCTGAAGATTACAGCACAAACAACAATGAGTTTAGTAATGATAGTGCACAGATTGATTGCATCACAAGTAGTCTTGAATCATGTTTGAATGAAAATGATGATTGCAGGGAAAAAGAAAAAGAAATGGAAATGGAATTTGACTTCAACAGTGTGACACAAACATCAAGTGCTGATATAAAGGAAGACAATGAAGAAGGAACTGATTTGAGTACTCAGGATTTTCAGTTCCTGGACAATGTTGTTCCATCCAGTTACCATTATTCACTTTTTGAGATTACTGAAGAGATTGAGGAGCAGTTGGAGCCTGAGAACTATGGTGATGAGCCTTCAATCCTTAGAGAAGTCATGAAGAGAATGAAATATGAGAGGAAGTCTTCAGCTTCCCTCTATACCTTCAATGGAATACCTGAATGTTTGAAGTTGAAACTTGAATCAGGAAACAAAAATAGAGGTGGAGTTTGTATTTCTAATCAACTAACCAACCTCAAGATGGCTTGTAGCAAGAACAAAATTGAGGGTATTGAGAAGAATGAAGAATACATAGAAGCAATGGATATGAAAGAGCCACAAACATCAGTTGGCATGGATTGCTCTTTCCCCTCTTTTTCATCCAGTATTGATGATGAACTGTTACTATGGAATTCACTTGATCTTCCTACTATTTTTTGTGTTAACTAG 1206 0.3997 MARKRKVSEEVEERNPSEETMAWDEVMKEAAALGSGRRLRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPTSQSSSTPALPSKITNLLLQRLKARNNNTRTNPCTLSSSSSSTSLSINQQQSQQEDVRGAESTYFTLDQFSDFLNDSEDYSTNNNEFSNDSAQIDCITSSLESCLNENDDCREKEKEMEMEFDFNSVTQTSSADIKEDNEEGTDLSTQDFQFLDNVVPSSYHYSLFEITEEIEEQLEPENYGDEPSILREVMKRMKYERKSSASLYTFNGIPECLKLKLESGNKNRGGVCISNQLTNLKMACSKNKIEGIEKNEEYIEAMDMKEPQTSVGMDCSFPSFSSSIDDELLLWNSLDLPTIFCVN* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0400 401 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Pvu8g0400 401 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 340 - -
Pvu8g0400 401 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Pvu8g0400 401 MobiDBLite consensus disorder prediction 1 20 - -
Pvu8g0400 401 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Pvu8g0400 401 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Pvu8g0400 401 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Pvu8g0400 401 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Pvu8g0400 401 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Pvu8g0400 401 Coils Coil 201 221 - -
Pvu8g0400 401 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 340 - -
Pvu8g0400 401 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Pvu8g0400 401 MobiDBLite consensus disorder prediction 128 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0400 Pvu-Chr8 3311273 3312478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0400 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 7.57e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu8g0400 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0400 K09286 - gmx:100796159 587.415