LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g0397	ATGGCAGCGTTCGTAATCAGGGTTTCACTGGACGGAACCGCTGATTTCCTAACGGTGCAGGAGGCGATCGACGCCGTGCCACTTGGCAACATTCGCCGGACGGTGATTCGGGTCTCGCCGGGAATCTACCCACAGCCGGTGTACATCCCCAAAACCAAGAATTTCATCACTCTCGCTGCTCTGTCCCCTGAGGAAACTGTGCTTACCTGGAACAACACTGCCGCCGGAATCAATCACCATCAACCTGCGAGGATGATAGGGACTGGGACCTTCGGTTGTGGAAGTACCATTGTGGAAGGGGAGGACTTTATTGCTGAGAATATTACTTTTGAGAATTCTGCCCCTCAGGGTTCGGGGCAAGCAGTTGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGTAGGTTCCTTGGATGGCAGGACACATTGTACTTGCATTACGGTAAACAATATTTGAAAGATTGTTACATTGAAGGAAGTGTGGACTTCATCTTTGGTAATAGCACTGCACTTTTGGAGAATTGTCATATCCATTGCAAGTCTGAGGGCTTCATAACTGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGATGCGTTATCACAGGTAATGGAGGAAATTCTTATGCATATCTTGGGCGACCGTGGGGCCCTTTCGGAAGGGTGGTCTTTGCATACACTTACATGGATCAGTGTATAAAACATGTTGGCTGGGATAACTGGGGGAAAATGGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTCTCCACCGAAGCGAGTAACATGGTGTAGAGAATTGTTGGATGAAGAAGCTTTGCAGTTCCTCACACATCCTTTCATCGATCCAGAACCAGAGAAACCTTGGCTTGCTCAAAAGATGGCCCTCAGAATTCCATACTCTGCATGA	951	0.47	MAAFVIRVSLDGTADFLTVQEAIDAVPLGNIRRTVIRVSPGIYPQPVYIPKTKNFITLAALSPEETVLTWNNTAAGINHHQPARMIGTGTFGCGSTIVEGEDFIAENITFENSAPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLENCHIHCKSEGFITAQSRKSSQETTGYVFLRCVITGNGGNSYAYLGRPWGPFGRVVFAYTYMDQCIKHVGWDNWGKMENERSACFYEYRCFGPGCSPPKRVTWCRELLDEEALQFLTHPFIDPEPEKPWLAQKMALRIPYSA*	317

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g0397	316	PANTHER	PECTINESTERASE	1	315	-	-
	Pvu8g0397	316	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	1	315	-	-
	Pvu8g0397	316	Gene3D	-	3	310	IPR012334	-
	Pvu8g0397	316	SUPERFAMILY	Pectin lyase-like	2	298	IPR011050	-
	Pvu8g0397	316	Pfam	Pectinesterase	7	296	IPR000070	GO:0030599\|GO:0042545
	Pvu8g0397	316	ProSitePatterns	Pectinesterase signature 2.	159	168	IPR033131	-

Showing 1 to 6 of 6 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g0397	Pvu-Chr8	3292853	3296713	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu8g0397	5	309	Carbohydrate Esterase	AT5G47500	38.291	1.33e-69	219

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g0397	K01051		-	gmx:100786786	627.861

Showing 1 to 1 of 1 entries