Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0393 ATGGAAGGAACATTATCAGGTGTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGACCTTCTGAGAGAGTGCGTTCAACTCTACGGGGAAGGAAAATGGCACCTTGTTCCTGGAAGAGCAGGGTTGAACAGATGCCGGAAGAGTTGCAGATTGAGATGGTTGAACTATTTGAAACCAAATATCAAGCGAGGAGATTTTGGTGAAGATGAAATTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCTCTCATTGCTGGAAGACTTCCGGGGAGAACTTCAAACGATGTGAAGAATTACTGGAACACCAACATGCGCCGCAAGGTACACTCTCACAACAAAGATGACAAGAACAAGAACAACGTAAAAGAATCCGAAACATGTTGGAAACCCCACCAAGTGATAAAGCCTGTGCCTCGAGCTTTGCGAAAAGCATCGCCCGTGCAGGGAAAAGTGATGAGTAGTTCGAAAGTTGGTGTTAGTGAAGGAGTTTCATTAGGGTGTGAGAATTGGTGGGAAACTCTGTTAGATGAGAAGGAAGAGAACACTGCAGTTGACAACATGATCTGGTTCCCTGGTGCCAAAGATGGAGCCTTTGAAGTTTGGGATGAAGAACTTGGTTCTATTGCTTCTGACTTTCTTGCAGAAGCTCAAACATTGACCGATTTTCTTCTTAGTCAACCTTCTACATTTGTCATCTCTGTTGCCTTTGATTCCATGGGAAGGGACTTCAACTTATCATAA 753 0.4356 MEGTLSGVRKGAWSQTEDDLLRECVQLYGEGKWHLVPGRAGLNRCRKSCRLRWLNYLKPNIKRGDFGEDEIDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRRKVHSHNKDDKNKNNVKESETCWKPHQVIKPVPRALRKASPVQGKVMSSSKVGVSEGVSLGCENWWETLLDEKEENTAVDNMIWFPGAKDGAFEVWDEELGSIASDFLAEAQTLTDFLLSQPSTFVISVAFDSMGRDFNLS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0393 250 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pvu8g0393 250 CDD SANT 68 108 IPR001005 -
Pvu8g0393 250 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Pvu8g0393 250 Gene3D - 10 62 - -
Pvu8g0393 250 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 138 - -
Pvu8g0393 250 CDD SANT 12 57 IPR001005 -
Pvu8g0393 250 Gene3D - 65 133 - -
Pvu8g0393 250 SMART sant 9 59 IPR001005 -
Pvu8g0393 250 SMART sant 62 110 IPR001005 -
Pvu8g0393 250 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Pvu8g0393 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Pvu8g0393 250 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Pvu8g0393 250 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Pvu8g0393 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Pvu8g0393 250 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 7 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0393 Pvu-Chr8 3273361 3274441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0393 7 145 MYB Transcription Factor Family AT1G66370 62.411 2.47e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g0393 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0393 - K16166 pvu:PHAVU_008G038600g 502.671