Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0387 ATGGGACGATCACCATGCTGTGACAAGGTGGGTCTGAAGAAAGGACCATGGACGCCAGAGGAAGATCAGAAGCTCTTGGCATATATTGAAGAACATGGTCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTGAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTATGCAAGAAGAGCAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCGGCGATAGCAACACATTTGCCAAAGAGAACAGATAATGAGATAAAAAACTACTGGAACACGCATCTGAAGAAAAGGTTAGACAAAATGGGAATTGATCCGGTGACTCACAAGCCCAAGAACGATGCCATTCTCTCCACCGAGGGCCATTCCAAGAGTGCTTCCAACCTAAGCCACATGGCTCAGTGGGAGAGTGCCAGACTCGAAGCAGAAGCAAGATTGGTGAGAGAATCAAAACTACGTACCTCACATTCATCATCACCCTCCCTGCACCATTCTCTAATTGGCACTTGTGCATCATCATCATCTTCTTCAGCTCCAGTATTACCCTCCTCAACACGTTTTCTTGATCATGCTTATGGTAGCAGTACCAGCACGGTTGCAACTAGGATGAGTGACCTTGAGTCCCCCACTTCTACCTTGTCTGAGAACAATGCTCCACCAATTATGACTAGCGTGATTGAGTTTGTTGGTTCTTCGGAGAGAGGGATGGTGAAGGAAGAAGGAGAGCGAGAGTGGAACAAAGGTTTTCATGAATACAAAGATGGCATGGAGAATTCAATGCCTTTCACGTCTAGTCTGCATGAGATGACAGTGACCATGGCAACCACGTGGGGGTCTAGCACTACCACTGCACATGCACATGGACAAGGACATGTTTCTGAAGAGGGATTCACCAACCTTTTGCTCAATTCTAACTCCGATCACCGGAGTTTGTCGTCGGAGGGTGGTGGCGACTCTAATAATAACTGTCATGGTAATAGTAGTGATGGTGTTAACGGTAACGGAAACGAGTTATACGAAGATAACAAGATCTATTGGAACAACATTCTTAATTTGATGAACTGTTCTTCACCTTCGGATTCACCCATGTTCTGA 1146 0.4599 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDAILSTEGHSKSASNLSHMAQWESARLEAEARLVRESKLRTSHSSSPSLHHSLIGTCASSSSSSAPVLPSSTRFLDHAYGSSTSTVATRMSDLESPTSTLSENNAPPIMTSVIEFVGSSERGMVKEEGEREWNKGFHEYKDGMENSMPFTSSLHEMTVTMATTWGSSTTTAHAHGQGHVSEEGFTNLLLNSNSDHRSLSSEGGGDSNNNCHGNSSDGVNGNGNELYEDNKIYWNNILNLMNCSSPSDSPMF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0387 381 CDD SANT 69 112 IPR001005 -
Pvu8g0387 381 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu8g0387 381 SMART sant 13 63 IPR001005 -
Pvu8g0387 381 SMART sant 66 114 IPR001005 -
Pvu8g0387 381 CDD SANT 16 61 IPR001005 -
Pvu8g0387 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu8g0387 381 MobiDBLite consensus disorder prediction 320 352 - -
Pvu8g0387 381 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 375 - -
Pvu8g0387 381 Gene3D - 13 66 - -
Pvu8g0387 381 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu8g0387 381 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu8g0387 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu8g0387 381 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu8g0387 381 Gene3D - 68 141 - -
Pvu8g0387 381 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu8g0387 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0387 Pvu-Chr8 3194073 3197505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0387 1 381 MYB Transcription Factor Family AT3G01140 53.234 6.58e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g0387 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0387 K09422 - gmx:100794047 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0329 4 3236815 3239402 Pvu8g0387 8 3194073 3197505 PCT