Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0383 ATGTCAACCTCGAGCCAGCACCAGTTCCGATACACTCAGACCCCCTCCAAGGTGCTGCACCTTCGCAACCTCCCCTGGGAATGCTCCGAGGAGGAGCTCAGAGAGCTCTGCAAGCCCTTCGGTAAGATCGTCAACACCAAATGCAATGTCGGCGCCAATCGCAACCAGGCTTTTGTTGAATTCGTAGATCTAAATCAAGCCATTTCAATGGTTTCGTATTATGCTTCATCTTCAGAACCTGCTATGGTTCGTGGCAAAACTGTTTACATTCAGTATTCTAATAGACATGAAATTGTCAACAACAAAAGTCCTGGAGATATTCCTGGAAATGTCTTGCTGGTAACTATTGAAGGTGTGGAGGCTGGGGATGTGAGCATTGATGTTATCCATTTGGTGTTTTCGGCTTTCGGCTTTGTTCACAAAATCGCAACATTTGAAAAGACTGCAGGTTTCCAGGCTCTGATTCAGTTCACTGATGCTGAAACTGCTTCTGCTGCTAGGGAGGCACTGGATGGAAGAAGCATACCAAGATACCTGCTACCAGCCCATGTTGGTTCTTGTAATTTGCGTATTTCATACTCAGCTCATAAAGATCTGAATATCAAATTTCAATCAAATCGCAGCAGGGACTACACAAATCCTATGCTTCCTGTTAACTATACTGCTATTGAGGGGACAGTACAGACGGCTATAGGCCCTGATGGGAAGAGGAAAGAACCTGAAAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACCGTTGATGTTCTCCATACAGTCTTCTCTGCTTTTGGTACTGTCCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCTGATGTCATGACGGCGGCAGCTGCTAGAGAAGCTCTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCTTTCAGTGACAAAAGTAGAGACTACACAGTGCCAGATCCTAGCCTGGTTGCAGCTCAAGGTCCTGCAACAGCTTGGCAAAATCCACAGGCTGCGCCTATGTACCATGGTAGTGCTCCTGCTTATCACACTCAAGTTCCGAGTGGGCAATGGGATCCATCTCTGCAGGCGGTTAGACCCAGTTACATATCTGCACCTGGTACTTTTGCAGCTTCCTCACCTCTTGCAAGCAGCCCCATTGGTCATAATGCAAATCCAACGGGAATCGCTCAGTCTGGGGTCCCACGCAATGTAAATTTACAGCCCAGTGGTGCTCTACTTTCAGTTCCTGGTTCCTCACCTCTCGTGCAGACCACCCAAGCTGCTCAAGGATTGGTTCAGCCAAATGCAAGACCTGGTGCTGCTTCACCTCCTGCTCAACATTATTATGCTTAG 1419 0.4637 MSTSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIVNTKCNVGANRNQAFVEFVDLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASAAREALDGRSIPRYLLPAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGTVQTAIGPDGKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDVMTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLVAAQGPATAWQNPQAAPMYHGSAPAYHTQVPSGQWDPSLQAVRPSYISAPGTFAASSPLASSPIGHNANPTGIAQSGVPRNVNLQPSGALLSVPGSSPLVQTTQAAQGLVQPNARPGAASPPAQHYYA* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0383 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 175 - -
Pvu8g0383 472 PANTHER OS02G0789700 PROTEIN 2 426 - -
Pvu8g0383 472 CDD RRM3_PTBPH1_PTBPH2 242 338 IPR034794 -
Pvu8g0383 472 SUPERFAMILY RNA-binding domain, RBD 4 106 IPR035979 GO:0003676
Pvu8g0383 472 Gene3D - 2 108 IPR012677 -
Pvu8g0383 472 CDD RRM2_PTBPH1_PTBPH2 109 203 IPR034793 -
Pvu8g0383 472 SUPERFAMILY RNA-binding domain, RBD 112 209 IPR035979 GO:0003676
Pvu8g0383 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 322 IPR000504 GO:0003723
Pvu8g0383 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Pvu8g0383 472 SMART rrm1_1 246 316 IPR000504 GO:0003723
Pvu8g0383 472 SMART rrm1_1 18 91 IPR000504 GO:0003723
Pvu8g0383 472 SMART rrm1_1 113 185 IPR000504 GO:0003723
Pvu8g0383 472 Gene3D - 241 344 IPR012677 -
Pvu8g0383 472 Gene3D - 109 220 IPR012677 -
Pvu8g0383 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 70 IPR000504 GO:0003723
Pvu8g0383 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 196 IPR000504 GO:0003723
Pvu8g0383 472 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
Pvu8g0383 472 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 426 - -
Pvu8g0383 472 Pfam RRM-like domain 242 320 IPR021790 -
Pvu8g0383 472 SUPERFAMILY RNA-binding domain, RBD 248 342 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0383 Pvu-Chr8 3141197 3146979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0383 10 206 Eukaryotic Initiation Factors Gene Family AT3G16380 25.000 5.32e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0383 K14948 - gmx:100792308 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0334 4 3317393 3331517 Pvu8g0383 8 3141197 3146979 PCT