Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0382 ATGGCGCTTCTTGGATTTCTTCTGGGACTTTTCTTCATGGTGTCACATGTGAAGGGTTACGGGGGTTGGACCAATGCACACGCTACTTTCTATGGAGGAGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGGAATCTCTATAGCCAAGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGTTTGAGCTGTGGTGCATGCTTTGAAATTAAATGTGTGAATGACCCACAATGGTGCCTTCCTGGCTCCATCGTAGTCACTGCCACAAACTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCCAACACCACTTTGATCTGTCACAACCTGTTTTCCAGCACATTGCTCAATATAAGGCTGGAATTGTGCCTGTAGTTTACAGAAGGGTGAGATGCAGGAGAAAGGGTGGAATCAGGTTCGCCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTGACAAATGTTGGAGGTGCTGGTGATGTGCATTCTGTGTCCATCAAAGGGTCAAGAACAAGATGGCAAGCCATGTCAAGAAACTGGGGGCAAAACTGGCAAAGCAACTCCTACTTGAATGGCCAAAGTCTTTCCTTTGTAGTGACCACCAGCAATGGACACAGTGTGGTGTCATACAATGTTGCTCCAGCTGGTTGGTCCTTTGGGCAGACCTACACTGGAAGACAGTTCAACTACTAA 720 0.4764 MALLGFLLGLFFMVSHVKGYGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPQHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRKGGIRFAINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPAGWSFGQTYTGRQFNY* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0382 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 155 234 IPR007117 -
Pvu8g0382 239 SUPERFAMILY PHL pollen allergen 142 234 IPR036749 -
Pvu8g0382 239 SMART dpbb_1 58 135 IPR007112 -
Pvu8g0382 239 Gene3D - 145 237 IPR036749 -
Pvu8g0382 239 PRINTS Expansin/Lol pI family signature 22 37 IPR007118 GO:0005576
Pvu8g0382 239 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Pvu8g0382 239 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Pvu8g0382 239 PRINTS Expansin/Lol pI family signature 128 144 IPR007118 GO:0005576
Pvu8g0382 239 PRINTS Expansin/Lol pI family signature 182 196 IPR007118 GO:0005576
Pvu8g0382 239 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Pvu8g0382 239 PANTHER EXPANSIN 5 238 - -
Pvu8g0382 239 SUPERFAMILY Barwin-like endoglucanases 10 163 IPR036908 -
Pvu8g0382 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 145 IPR007112 -
Pvu8g0382 239 PRINTS Expansin signature 53 67 IPR002963 GO:0009664
Pvu8g0382 239 PRINTS Expansin signature 80 91 IPR002963 GO:0009664
Pvu8g0382 239 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Pvu8g0382 239 PRINTS Expansin signature 103 120 IPR002963 GO:0009664
Pvu8g0382 239 PRINTS Expansin signature 120 133 IPR002963 GO:0009664
Pvu8g0382 239 PRINTS Expansin signature 144 156 IPR002963 GO:0009664
Pvu8g0382 239 PRINTS Expansin signature 156 177 IPR002963 GO:0009664
Pvu8g0382 239 PRINTS Expansin signature 191 212 IPR002963 GO:0009664
Pvu8g0382 239 PRINTS Expansin signature 220 236 IPR002963 GO:0009664
Pvu8g0382 239 Pfam Lytic transglycolase 58 135 IPR009009 -
Pvu8g0382 239 Pfam Expansin C-terminal domain 146 223 IPR007117 -
Pvu8g0382 239 Gene3D - 13 141 IPR036908 -
Pvu8g0382 239 PANTHER EXPANSIN-A15 5 238 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0382 Pvu-Chr8 3131412 3133124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0382 1 237 Expansin Gene Family AT2G03090 78.138 1.99e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0382 - K20628 gmx:100791784 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0336 4 3354742 3356837 Pvu8g0382 8 3131412 3133124 PCT