Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0354 ATGTTCATGGCTTCGTCTAACAGTTTGCTTCCTTTGGCCCTTTTAATGGTTCTCTGTGTACCAGCCTTCTCATATGACAGTACATGGCAGAGTGCCCATGCAACTTTCTATGGTGACATGCAAGGTGGAGAAACCATGCAGGGAGCTTGTGGTTATGGTAATCTCTTCCAGCAGGGTTACGGGCTTGAAACTGCAGCCCTAAGCACAGCACTATTCAACAATGGTCTGAGTTGTGGTGCATGTTTTGAGATAAAGTGTGTGGACGATCCTCAATGGTGCATTCCAAATGCAGGCTCAATCAAAGTGACTGCAACAAATTTCTGTCCTCCCAATTACTCCTCACCAAATTTTGACCATTGGTGCAACCCTCCGCAGAAACACTTTGACTTGTCCATGAGTATGTTCACCACCATTGCCGAGTACAAAGCTGGGATCATCCCAGTGAAGTATCGTCGTGTGCCATGCTCCAAATCTGGGGGTGTCAAGTTCCAAACTGCTGGGAACCCTTATTGGCTTCAAGTTTTGCTGTACAACGTTGGCGATGGTGGTGATGTTTCTCAGGTGAACATCAAAGGTTCCAACAGCAATGGGTGGACATCCATGTCTAGGGTTTGGGGACAGAATTGGGTCACTGGAGAGAACTTGGTGGGGCAATCTTTGTCCTTTCAGGTAAGTACCAGTGATGGAAGAGTGTTGGAGTTTGATGGGGCTATACCTTCCAATTGGCAATTTGGGCAGAGCTACGAGGCCAACACAAATTTTTAG 765 0.4693 MFMASSNSLLPLALLMVLCVPAFSYDSTWQSAHATFYGDMQGGETMQGACGYGNLFQQGYGLETAALSTALFNNGLSCGACFEIKCVDDPQWCIPNAGSIKVTATNFCPPNYSSPNFDHWCNPPQKHFDLSMSMFTTIAEYKAGIIPVKYRRVPCSKSGGVKFQTAGNPYWLQVLLYNVGDGGDVSQVNIKGSNSNGWTSMSRVWGQNWVTGENLVGQSLSFQVSTSDGRVLEFDGAIPSNWQFGQSYEANTNF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0354 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 160 IPR007112 -
Pvu8g0354 254 Pfam Lytic transglycolase 64 150 IPR009009 -
Pvu8g0354 254 PANTHER EXPANSIN-A21-RELATED 14 254 - -
Pvu8g0354 254 SUPERFAMILY Barwin-like endoglucanases 17 178 IPR036908 -
Pvu8g0354 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Pvu8g0354 254 Gene3D - 159 254 IPR036749 -
Pvu8g0354 254 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Pvu8g0354 254 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Pvu8g0354 254 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Pvu8g0354 254 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Pvu8g0354 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Pvu8g0354 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Pvu8g0354 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Pvu8g0354 254 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Pvu8g0354 254 Gene3D - 18 156 IPR036908 -
Pvu8g0354 254 SMART dpbb_1 64 150 IPR007112 -
Pvu8g0354 254 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Pvu8g0354 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Pvu8g0354 254 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Pvu8g0354 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Pvu8g0354 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Pvu8g0354 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Pvu8g0354 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Pvu8g0354 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Pvu8g0354 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Pvu8g0354 254 PANTHER EXPANSIN-A15 14 254 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0354 Pvu-Chr8 2903260 2905172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0354 21 254 Expansin Gene Family AT5G39270 62.821 3.57e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0354 - - vun:114185907 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0354 8 2903260 2905172 Pvu8g0354 8 2903260 2905172 ECH