Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0342 ATGGCGTTCTTAAATAAAATTGGAAATCTACTCAAGAGTTCTGCTGTCAAGCACATGAATCAAGATTTTTCTGTATCTAGCCCCTCACTTTTCCAAGCAATTAGATCCATGTCATCTGCAAAGATTTTTGTCGGAGGTATTTCTTACAGCACTGATGATATGAGCCTGCGGGAGGCTTTTGCTCGCTATGGAGAAGTACTTGATGCCAAGGTTATTATGGATCGTGAAACTGGCAGGTCCAGAGGTTTTGCCTTCATAACCTATGCAACAAGTGAGGATGCAACTGCTGCCGTTCAGGCCTTGGATGGACAGGATCTTCATGGTCGGAGAATTCGGGTGAATTATGCTACAGAAAGGTCGCGCCCAGGGTTTGGTGGTGGTGGTGGCTTTGGTGGTGGTGGCTATGGTGGTGGTGGCTATGGGAGCAGCGGTGGTGATTATGGTAGAGGTGATAGTTATGGAAGTAATAACAGGGGTGGAAGCTATGGAAGTGGTGGTTATGGTGTTACAGGAAGCTATGGCGGTGGCAGTGCTGAAACTAGTAATTACCAATTCGGTGGAAATTCTGGTGGAGATCTTGGTTCAGCTGGTGTTGAATTCGGAAGCAACCAAAATGAAGGAACAGGCGCAGCAGACAATGAGCCATTTGAAGACAATGTGAGGGGGAACAGCGATGAAACTGATGGCTATGCTCAGACCCGCGGGTGA 708 0.4732 MAFLNKIGNLLKSSAVKHMNQDFSVSSPSLFQAIRSMSSAKIFVGGISYSTDDMSLREAFARYGEVLDAKVIMDRETGRSRGFAFITYATSEDATAAVQALDGQDLHGRRIRVNYATERSRPGFGGGGGFGGGGYGGGGYGSSGGDYGRGDSYGSNNRGGSYGSGGYGVTGSYGGGSAETSNYQFGGNSGGDLGSAGVEFGSNQNEGTGAADNEPFEDNVRGNSDETDGYAQTRG* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0342 235 Gene3D - 12 136 IPR012677 -
Pvu8g0342 235 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 224 - -
Pvu8g0342 235 PRINTS Eggshell protein signature 36 52 - -
Pvu8g0342 235 PRINTS Eggshell protein signature 125 140 - -
Pvu8g0342 235 PRINTS Eggshell protein signature 153 163 - -
Pvu8g0342 235 PRINTS Eggshell protein signature 186 204 - -
Pvu8g0342 235 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 224 - -
Pvu8g0342 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Pvu8g0342 235 MobiDBLite consensus disorder prediction 186 235 - -
Pvu8g0342 235 SUPERFAMILY RNA-binding domain, RBD 24 149 IPR035979 GO:0003676
Pvu8g0342 235 SMART rrm1_1 41 114 IPR000504 GO:0003723
Pvu8g0342 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0342 Pvu-Chr8 2790394 2793472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0342 12 119 Eukaryotic Initiation Factors Gene Family AT1G49760 29.630 3.31e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0342 K12741 - gmx:100818300 273.863