Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0271 ATGGGTTCAGTTTGTTGCTGTTTTAATGTTGATGACATTGAAGATTATATGCATCCAAATAGTCCTGTATACAGGAACTGTGCGTGTCTCAGTTGTTTCGCACAGTACTTTTTGACTGTGTATGCCTCAATATTCCGTAGAGGGGAAGTGCATGCAATTCCTTCATCTATACAGGGTGCAGCATCTATGACTTCTACAGCATCACTTGATAGTTCTCTATCTGACATTTACCGTTCTCCTCCAAGACCGTTGCCATATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGCGATGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGGAGATGCTGACTCAGAATCTTTAAATTTGGGTGGCAAATGGAATGACACCAGTGAAGATGGATCAAAGGAATACCGTAAGTCCTCTGTGAGACTTTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTGTATTCATCATCAGAAGAGGAGGATGTCTGTCCGACTTGTCTAGAAGAATACACTGAAGAAAATCCAAAGATAGTGACAAACTGCTCTCATCATTTTCACCTTGGTTGCATATATGAGTGGATGGAAAGAAGTGACAACTGTCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 678 0.4233 MGSVCCCFNVDDIEDYMHPNSPVYRNCACLSCFAQYFLTVYASIFRRGEVHAIPSSIQGAASMTSTASLDSSLSDIYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDGDADSESLNLGGKWNDTSEDGSKEYRKSSVRLSSAKLTTGAGVVYSSSEEEDVCPTCLEEYTEENPKIVTNCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0271 225 MobiDBLite consensus disorder prediction 99 149 - -
Pvu8g0271 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 222 IPR013083 -
Pvu8g0271 225 MobiDBLite consensus disorder prediction 99 123 - -
Pvu8g0271 225 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 224 - -
Pvu8g0271 225 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Pvu8g0271 225 SMART ring_2 175 215 IPR001841 -
Pvu8g0271 225 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Pvu8g0271 225 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 224 - -
Pvu8g0271 225 SUPERFAMILY RING/U-box 170 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0271 Pvu-Chr8 2239678 2244410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0271 1 224 C3H Transcription Factor Family AT5G15790 58.009 4.63e-93 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0271 - - gmx:100788192 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0271 8 2239678 2244410 Pvu8g0271 8 2239678 2244410 ECH