Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0261 ATGAAGGTGGACGAACCCAGCACGGGAAAGAGGGTGAATACGCATCGTTCAAAGCATTCAGAGACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGTTTCAAGTTCTGAGAGATCTCATACCTCAAAATGATCAGAAAAGAGACAAGGCATCCTTCTTGTTGGAGGTTATCGAGTATATTCAGTTCCTACAGGAAAAATTACAAATTTATGAGCAGTCTTATGAAGGATGGAGTCAGGAGCCAACGAAATTAATTCCATGGAGAAATCATCACGGGCCTGCAGAAAATCCTACAGATCCTTCTCAAACTATACAAAATGGGTCTGTTGATGAGAAAAATAACAGTGCCTCTCCATTGTTTCACGGAAATATACCGAACCCTATGGAGTCTGATTTCTCAATGATGACTGTTCAGAAGGGCCACATCCCTTGTTCATCTACCGATGCGGTTCCCTTGACCATGCAAATGCGATTGGACATGTTTGATCCAGTTGTTAGCAGTGGTATGACTACCCAACATCTTCAGGAATCTGTTTCTAACGTTGACATGCATTCCCATACCCAGCCACAATTGTGGCTTGATAAATCAAACAAGGACAACTATATTCTTCCACATGATAGTACAATGAAGGAACAGGAGGAGCTAGTTATTGAATCTGGATCAGATAGCATTTCTAGTGCCTATTCTCAGGGAATTTTAGATACTCTCACGCAAGTGCTGCAGTCTTCGGGGGTAGATATGTCCCAAACTAATCTCTCGGTGCAAATTGATGTTGGTAGACGAGCAAATGCTGAGTTGGACCCCTCTGCATATAGTTCAAAGGTTCATGAAAATCAATTTGTGAGCAACCCAGCAATATCACGTTCTGGAGTTGATTACTGCAATATTGAATCCGAACAAAGTTCGAAGAGGCTCAGACAAGAAGCAAGCTAG 936 0.422 MKVDEPSTGKRVNTHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQSYEGWSQEPTKLIPWRNHHGPAENPTDPSQTIQNGSVDEKNNSASPLFHGNIPNPMESDFSMMTVQKGHIPCSSTDAVPLTMQMRLDMFDPVVSSGMTTQHLQESVSNVDMHSHTQPQLWLDKSNKDNYILPHDSTMKEQEELVIESGSDSISSAYSQGILDTLTQVLQSSGVDMSQTNLSVQIDVGRRANAELDPSAYSSKVHENQFVSNPAISRSGVDYCNIESEQSSKRLRQEAS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0261 311 Coils Coil 61 81 - -
Pvu8g0261 311 Gene3D - 12 85 IPR036638 GO:0046983
Pvu8g0261 311 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 310 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pvu8g0261 311 PANTHER TRANSCRIPTION FACTOR BIM3 1 310 - -
Pvu8g0261 311 MobiDBLite consensus disorder prediction 1 31 - -
Pvu8g0261 311 Pfam Helix-loop-helix DNA-binding domain 16 65 IPR011598 GO:0046983
Pvu8g0261 311 MobiDBLite consensus disorder prediction 96 115 - -
Pvu8g0261 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 64 IPR011598 GO:0046983
Pvu8g0261 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 93 IPR036638 GO:0046983
Pvu8g0261 311 CDD bHLH_AtBIM_like 13 89 - -
Pvu8g0261 311 SMART finulus 20 70 IPR011598 GO:0046983
Pvu8g0261 311 MobiDBLite consensus disorder prediction 87 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0261 Pvu-Chr8 2162578 2166258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0261 16 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 46.183 3.11e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g0261 HLH 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0261 - - pvu:PHAVU_008G025500g 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0261 8 2162578 2166258 Pvu8g0261 8 2162578 2166258 ECH