Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0233 ATGTTGGAGGGAGAACCTGCTGGCACGTGGGCGCGCACGTGCGACACGTGCCGCTCCGCACCATCCACCGTCTTCTGCCGCGCCCACAACGCCTACCTCTGCTCCTCCTGCGATGGGCGCGTTCATCACACCTCCTCCTCCTCTTGGCACGAGCGCGTCTGGGTCTGTGAGGCCTGCGAGCGGGCACCGGCGGCGTTCCTATGCAAGGCCGACGCCGCCTCCCTCTGTTCCTCATGCGACGCCGACATCCACTCCGCCAACCCTCTCGCCAGCCGCCACCACCGCGTCCCCATCCTCCCCATAGCTGCCGGCCACCACTCCCACGTCGAAATAGACGTCGCCGACGACGACGATGCTGCTGACGTGGACGACGACGACGAAACCGCTTCCTGGCTCTTGCTCAACCCTGTCAAAACCGGCACTGTCCCTAACAGCAACAACAATGGGTTCTTGTACAGTGGTGAGGTTGATGAGTATTTGGACCTTGTTGATAACTGTAACTCTTGCGGTGACAACAACCACTTCGCTGCAACAACTACCACTACTGCCACTACTGCTGATCATTACACTCAGCACCATCATTTTGATGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGTGTGGTTCCGGTTCAGCAGCACCAGCATTTTCAGCTTGGCTTGGAGTTTGAGAATTCTAAGCCTGCGTTCAGTTACAATGGTTCTATTAGTCAAAGTATTTCAGTTTCAACATTGGATATTGGTGTTGTACCTGAATCACCCATGAGGGATGTCTCAATTTCCCATACAAGACCCCCCAAAGGGACGATTGACCTATTTTCTGGACCTCCCATTCAGATGATGCCTTCCCACTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAAACTAGACCCCGTATAAAGGGTCGATTCGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATTACAGAAGTTGGATATGGCCTTGTTCCCTCTTTCTGA 1080 0.5306 MLEGEPAGTWARTCDTCRSAPSTVFCRAHNAYLCSSCDGRVHHTSSSSWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIAAGHHSHVEIDVADDDDAADVDDDDETASWLLLNPVKTGTVPNSNNNGFLYSGEVDEYLDLVDNCNSCGDNNHFAATTTTTATTADHYTQHHHFDGVSQKSYAGDSVVPVQQHQHFQLGLEFENSKPAFSYNGSISQSISVSTLDIGVVPESPMRDVSISHTRPPKGTIDLFSGPPIQMMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGLVPSF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0233 359 ProSiteProfiles CCT domain profile. 290 332 IPR010402 GO:0005515
Pvu8g0233 359 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 10 359 IPR045281 GO:0009909
Pvu8g0233 359 ProSiteProfiles Zinc finger B-box type profile. 9 55 IPR000315 GO:0008270
Pvu8g0233 359 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Pvu8g0233 359 Pfam CCT motif 290 332 IPR010402 GO:0005515
Pvu8g0233 359 CDD Bbox1_BBX-like 14 55 - -
Pvu8g0233 359 CDD Bbox1_BBX-like 55 98 - -
Pvu8g0233 359 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 10 359 - -
Pvu8g0233 359 SMART bboxneu5 51 98 IPR000315 GO:0008270
Pvu8g0233 359 SMART bboxneu5 9 48 IPR000315 GO:0008270
Pvu8g0233 359 Pfam B-box zinc finger 53 98 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0233 Pvu-Chr8 1954195 1956881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0233 3 359 C2C2-CO-like Transcription Factor Family AT3G02380 53.639 9.33e-123 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu8g0233 zf-B_box 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0233 - - gmx:100301886 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0506 4 5393150 5395277 Pvu8g0233 8 1954195 1956881 PCT