Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0201 ATGTCTGCAATGGTTTCAGCTCTTGCTCAAGTTATGGGAACTTCCACTCACAACCCTCCCATGCCACAATCAACCTCTTTTCCTCTCCCAGATCAACCTCAACCTCCTTCAGATCAAGGGGTGAGAAAGAAGGCACACTACAGAGGAGTGAGGCAGAGACCATGGGGGAAATGGGCTGCAGAAATCCGTGACCCTAAGAAAGCAGCCAGAGTGTGGTTAGGAACCTTTGAAACTGCAGAGGATGCAGCCCTTGCTTATGACAGGGCAGCCCTAAAGTTCAAGGGCACAAAAGCAAAGCTCAATTTCCCTGAAAGAGTTCATCACAATGCTCCTTGTATGCAGCAACAACAACACCAACCTTCATCAAACACAAACACTTTTCCCTTCCATGCAACTTCCAACACTGCTCCCACTCACTCTTTTTCTTCTGTTCCTGTTCCTGCTCCACCCTCATCTTCCACACATGATCATCATCAACATGGCCACCAACTTTTTCCAAACCTGCTTCAATATGCACAGATTCTTTCAAGTGACGATGCAGAGTTTCCTTACTACACATCTCATCTTTTCAGTCAACAACATCAGCAGCAGCAGCAGCAGCAAGAACAGCAACCTTTCACCTCTCAATTCTCTACCACTTTTTCTTCAACCTCTTCTCAAGCATCCTACTTCTACAACCACCAACAACAATTTGATGACCAGGGTCATGATCACTCAGGCCAATAG 726 0.4628 MSAMVSALAQVMGTSTHNPPMPQSTSFPLPDQPQPPSDQGVRKKAHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDRAALKFKGTKAKLNFPERVHHNAPCMQQQQHQPSSNTNTFPFHATSNTAPTHSFSSVPVPAPPSSSTHDHHQHGHQLFPNLLQYAQILSSDDAEFPYYTSHLFSQQHQQQQQQQEQQPFTSQFSTTFSSTSSQASYFYNHQQQFDDQGHDHSGQ* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0201 241 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Pvu8g0201 241 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Pvu8g0201 241 MobiDBLite consensus disorder prediction 112 160 - -
Pvu8g0201 241 PANTHER DNA-BINDING DOMAIN 24 235 IPR044808 GO:0003700|GO:0009873
Pvu8g0201 241 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Pvu8g0201 241 MobiDBLite consensus disorder prediction 12 49 - -
Pvu8g0201 241 MobiDBLite consensus disorder prediction 112 154 - -
Pvu8g0201 241 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Pvu8g0201 241 MobiDBLite consensus disorder prediction 191 214 - -
Pvu8g0201 241 Gene3D AP2/ERF domain 45 105 IPR036955 GO:0003700|GO:0006355
Pvu8g0201 241 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Pvu8g0201 241 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Pvu8g0201 241 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 24 235 - -
Pvu8g0201 241 CDD AP2 45 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0201 Pvu-Chr8 1707540 1712293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0201 4 190 AP2-EREBP Transcription Factor Family AT5G13330 49.223 4.95e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu8g0201 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0201 - - vun:114185501 293.123