Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0149 ATGAAGAGAGAAAGAGAGGTTGACAGTGTAAGCATGGCGAATTGTTTGATGTTGCTCTCTCGTGGAGGTGAATTTGAGGCCTCATATTCAAGCTCTTCTTCCATGAGCAACCGTGTGTTTGAGTGCAAGACATGCAATAGACAGTTCCCTTCTTTTCAAGCACTTGGTGGGCACAGGGCTAGTCACAAGAAACCTAGGTTGATGGCAAGTGAAGGAGAATTGCTTCATGATTCACCTGCAAAGCCTAAGACTCATGAGTGTTCTATTTGTGGATTGGAGTTTGCTATAGGGCAAGCCTTGGGAGGGCACATGAGGAGACACAGAGTTGCAAATTTGAACAATTCCACCACCAGTAGTAGTGGTGGGAGCAGTGTTGATTCTTCAAGCAAGAACAACAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGTTTTTGAAGATCAGAAAACCAACTACTTTGGTTGATTATTTGTATTAG 498 0.4257 MKREREVDSVSMANCLMLLSRGGEFEASYSSSSSMSNRVFECKTCNRQFPSFQALGGHRASHKKPRLMASEGELLHDSPAKPKTHECSICGLEFAIGQALGGHMRRHRVANLNNSTTSSSGGSSVDSSSKNNKRVLVLDLNLTPFENDLEFLKIRKPTTLVDYLY* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0149 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Pvu8g0149 165 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Pvu8g0149 165 SMART c2h2final6 85 107 IPR013087 -
Pvu8g0149 165 SMART c2h2final6 40 62 IPR013087 -
Pvu8g0149 165 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Pvu8g0149 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Pvu8g0149 165 Pfam C2H2-type zinc finger 85 108 - -
Pvu8g0149 165 Pfam C2H2-type zinc finger 39 65 - -
Pvu8g0149 165 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 5 156 - -
Pvu8g0149 165 SUPERFAMILY beta-beta-alpha zinc fingers 38 107 IPR036236 -
Pvu8g0149 165 Gene3D Classic Zinc Finger 37 107 - -
Pvu8g0149 165 PANTHER ZINC FINGER PROTEIN ZAT5 5 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0149 Pvu-Chr8 1271652 1272284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0149 11 148 C2H2 Transcription Factor Family AT2G28710 50.685 1.77e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu8g0149 zf-C2H2_6 4.9e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0149 - - pvu:PHAVU_008G014600g 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0149 8 1271652 1272284 Pvu8g0149 8 1271652 1272284 ECH