Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0139 ATGGCCGCCGGAATAGACATGTCACTCGACGACATTATGAGGCGCTCTGCCGAGGCGGCGACATCTCGTCGGCGATTCTCGTTTGTACGCAGCGCGGCTAGCACGACGCCGTATCCCGTCCCGCAGGCAAGGCAACGCGCAATGTTTCCAGAAATGGGGTTTGAAGATGACGGAGCCGCCATGATCGAAAGTGGCACTAAACTCTTGATATCTAACTTGGATTATGGAGTTTCGAACGGTGATATCAAGCTGCTTTTCTCGGAAGAGGGTGAATTGAAAAGATACTCAATTAATTACGATCAGAATGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTCATGAGGCACTCGGATGCTTTATCAGCCATCAAGAAATACAACTATATGAGGCTTGATGGAAAACCATTGCAAATTGAGCTCGTTAGAACTAGTACTCCTGTTTTTGCTCCTCTTCGTCAAAATAACTTACTGGAAAGACCAACTGATTCGCTTCTAAGCAAAGGAGGAAGAGTTGGAGGTATGGGTTTCTACAGTGACTTTGTACAGGACCACCTTCCAAGGGGCAGTGGAAAAGAGAAGGGATATAGTCGAAAGTTATATTTTAGAGATCTTGATCATGACTTGGAGAGGTCTCACCACTTTTCAAGAGGCCACGCAAAAGTAAAGAGCAATAATATAAAAGTGACTGCTAAAGATCTTGATGATGACTTGGAGAGGTATCACCTAGAGGCTAAGGCTAAGGAGATTATAACACAAAATGGAAAGTCAGATAATAGTTGA 780 0.4462 MAAGIDMSLDDIMRRSAEAATSRRRFSFVRSAASTTPYPVPQARQRAMFPEMGFEDDGAAMIESGTKLLISNLDYGVSNGDIKLLFSEEGELKRYSINYDQNGRSKGTAEVVFMRHSDALSAIKKYNYMRLDGKPLQIELVRTSTPVFAPLRQNNLLERPTDSLLSKGGRVGGMGFYSDFVQDHLPRGSGKEKGYSRKLYFRDLDHDLERSHHFSRGHAKVKSNNIKVTAKDLDDDLERYHLEAKAKEIITQNGKSDNS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0139 259 SMART rrm1_1 67 139 IPR000504 GO:0003723
Pvu8g0139 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 136 IPR000504 GO:0003723
Pvu8g0139 259 PANTHER THO COMPLEX SUBUNIT 4A 6 243 - -
Pvu8g0139 259 Gene3D - 51 200 IPR012677 -
Pvu8g0139 259 SUPERFAMILY RNA-binding domain, RBD 62 148 IPR035979 GO:0003676
Pvu8g0139 259 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 6 243 - -
Pvu8g0139 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 143 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0139 Pvu-Chr8 1206100 1208705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0139 61 142 Eukaryotic Initiation Factors Gene Family AT2G36660 25.610 4.50e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0139 K12881 - gmx:100785926 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0139 8 1206100 1208705 Pvu8g0139 8 1206100 1208705 ECH