Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0100 ATGGATGAGCATATTATCATGTCATCATCTCCTAATAGATTGGTGGAATGTAGAATATGCCACAGTGAGGATGAAGATTCAAACATGGACACACCCTGTTCTTGCTGTGGCACATTGAAGTATGCACACCAAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGAGATACTACATGTGAAATTTGCCAACAGCAACTCAAACCTGGCTATACTGTGACTCCACTATTACACTATGCTTCTCCAATAAATTTTAGAGGGAACTGGGAGATTTCAAGAAGGGATGAGTTCACAGCAATGTTTAGTGCTAATCATGAATTCCTAGACCTAGACTTTGAATATTCATCAGCCCCCTCTACAAGAAGCCTCATATTTTGCCGCATTGTTACCATTATTTTTATTGGTCTTCTTGTTTTACGCCATACACTTCCAATCATATTTATACTCAGAGGAGCAAGAGCATATTCATTCACAGTGTTTATGTCAGTAGTTTTGAGAAACATTGGGATGATTGTACCATTTTATATAATGGTTAAAGCTATTATTTCAATCCAACAGTTTCAATACCAGGGTCATCTGCAAGCACACCAGGAAAATGAAATAGAACGGCCTCAGTTGCGTGTTATTCATATAAGTGAATCAGTGGTAAACTCCAGAGTGGAGTAA 663 0.3801 MDEHIIMSSSPNRLVECRICHSEDEDSNMDTPCSCCGTLKYAHQKCVQRWCNEKGDTTCEICQQQLKPGYTVTPLLHYASPINFRGNWEISRRDEFTAMFSANHEFLDLDFEYSSAPSTRSLIFCRIVTIIFIGLLVLRHTLPIIFILRGARAYSFTVFMSVVLRNIGMIVPFYIMVKAIISIQQFQYQGHLQAHQENEIERPQLRVIHISESVVNSRVE* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0100 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 72 IPR013083 -
Pvu8g0100 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 5 198 - -
Pvu8g0100 220 Pfam Protein of unknown function (DUF3675) 68 180 IPR022143 -
Pvu8g0100 220 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 5 198 IPR033275 -
Pvu8g0100 220 SUPERFAMILY RING/U-box 15 66 - -
Pvu8g0100 220 ProSiteProfiles Zinc finger RING-CH-type profile. 9 69 IPR011016 GO:0008270
Pvu8g0100 220 CDD RING_CH-C4HC3_MARCH 17 63 - -
Pvu8g0100 220 Pfam RING-variant domain 17 62 IPR011016 GO:0008270
Pvu8g0100 220 SMART ringv_2 16 63 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0100 Pvu-Chr8 938695 940732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0100 16 63 C3H Transcription Factor Family AT2G37950 47.059 1.69e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0100 - - var:108321682 355.525