Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0094 ATGGATTCTGAAACCCTAGACTCCACTCAGCTATACCTCACCGCCCTAACAACCCTCCAACAACCCCCTCCTCCACCCTCCGCCGCCCTCCCCCCACTCCCCTCCTCCGTCCCTCACTCCAAACTCATCCCCCACACCCGCTTCCTCGTCGATGCCTTCCGCCACGCCGGCCCCCACTCCCACTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACACCGGCCTCTCCGCCTCCTGGTCCCGCGGCGTCATCTACTGCTCCGCCACCACCGCCTCTCTCCTCCGCCACATCCTCCACGTCCCCGCCGCCCTCGTTGTCCCCCTCCCCCTCCGCCAACCGCTCCTCATTGACGGCGTACAAGTCTCCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTCCAGTTCCTCTTCGCCCTCCCCTGCGCCGATGGCACCGCCGCCCTAAGGTACGTCCACACCGGCGACTTCCGCTTTTCACCTTCCATGGTTTCCGAGCCCGCCCTCGCCTCCTTCGTCGGTGCCGATGCGGTGTTTCTCGACACCACGTATTGTAACCCTAAGTTCGTTTTCCCCTCGCAAGATGAATCCATTGATTACGTTGCCAGTGTTGTGGAGAGGATTGAACGTGAGTGTGGTGATAGTAATGATAAGGTTCTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAAAAGATTTTGCTTGAGCTTGCACGTAGGTTTAAGAGGAAGATACATGTTGATGCTAAGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGTGAGAGCGGTGAGTTTACTGAGAATGGGTTAGAGAGTAATATTCATGTAGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGGCCTAATTTTGTCAAGATGAAGGAGGTTATGGCTGAGAGAGGGGGTTCCTACTCCAGGGTTGTGGGCTTTGTTCCAACCGGGTGGACCTATGAGGTGAAGCGAGGTAGGTTTGCAGTGAAGTCCAAGGATTCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCGAACTATGATGAGCTGAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGAGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGAGTGACAGCAAACATGCTGACAGAATTAGGAAGCATTTTGCCGGGTTGGTCGATGAGACTGCTAACAAGCACGAGTTTTTAAGGGGTTTTTGCCGTGCACCTGGTGAAGAGGGTTTCAAGGCTGAGAAGGGTGTTAGTGATGCTCTGGAACCAAGTCAAGGCATGGACAAAGAAAAGGTCATTCCATTGGAGGAGATAGAAGGTAATAAAAGTGTGGGTTTGCCTTCTTTTATGGGAGATACTTGTACACAAGATCCTACTTTGCTGAATGATGAAGAAAAAGAGAAAATAATTCGAGAACTTAGTTTTTGTTTGCCCAAGTGGGTCACCCGAGTCCAGATGCTGGATATGATCAGCATCTCAGGGAGCAACGTTGTTGAACTTGTTTCTAATTTCTATGAACGTGAAACTGAGTTTCATGAGCAAGTGATTTCCTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCACAATAAATGACACTGATTCACTTGTAAAACCTAGCCTTAATAATACAAACAGGACATGCGAAAATATTGACATTTTTCCGAGTCAAGACTCCAAATCAACTATCCTGGGGCGGAAAGTATCCAGTCCCATATCTCCTGCCAAAAGTCCTGCCAAAAGGAAGAGAAGTAATGACAGTAAGCTAAACAAAAAAGGCAAAGTCAAAGCAAAATCTGAACCAAGTGGTTCGAAGCAGTCCACACTTACAAGATTCTTCAGTAAAGTAACACCTGAGATGCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGACCAAAGCTCTGAAGTTGTGGACTTGTTGCCGACTGATGTTGGACAAATATACAAGGATGAAATTGATCAATTTTTGCAGATAATAAATGGGAATGAGTCATTAAAGAATCATGCCATGACTATAATTAAGAAGACAAAAGGAGATGTCAATAAAGCACTGGATATATATTACTGTAATTCTGGAAATCTTAGCGAAAATGAAAATGAATTATCAGTTATAGAGGAGAGCACAATTGATAGACCTTTAGTAACGAAGCATGCGTCAGAGGGATTGAGAGTTACGCCTGATATGTCTGGGCAGAAAGTGTTAAAAGATAATGTAGATGCCACTCAACTATCTCTACCACCAGAGAAATACAGCCCTAAAGAACATGCATGTTGGACAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTCAACCTGCTCGAGGGTGAGAGAGGAAAGATTAAAGCTACTTCATTGTTATGCAATATGTTCAGAAGTCTGTTGGCCTTATCTCCAGCAGATGTGCTTCCTGCAGTGTATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGTTTGAAAATAAGGGAGATGTACAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAATTTCGTCAAACACAGAGATTGCTTGCACCACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCGCTACAAAAGATAAGTGTACAAACAGGCAGTGGAAGTACATCTCGGAAGAAAGGCATTATTGTTCATCTCATGCACTCCTGCCGTGAGAAGGAGATGAAGTTTCTTGTTCGTACCTTGGTCAGGAACCTAAGGATTGGGGCCATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTAGCCCCACTTTTCACCAAGGAGGAACTGCAGAAAATTTGAAGGAGAAACTTCAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCTAATCTGGATCTCATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCCGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCTCAAGCACTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAACGGGCTCAAATTCACAAATTAGTTGATGGATCCATTCGTGTTTTTTCAAGAAATGGGGACGAAACAACTTCAAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCATAATGGATGTGGAAGTTGTTGGTATTGACAGGAAAAATGGATGTAGGATTATGTCTTTCCAGGAGCTATCATCACGTGGGAGAGGTGGCAAAGATGCATTAGTGACTGCAGAGAGCATTAAGGTGGCTATATGCATCTTTGTCTTTGATATCATGTTTGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTACGCCTTAGACGAAAGTATCTGAAGGATTTATTCTATGCTGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTGCTTAGCCTGTGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTCCGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATGTTGAGGCTGGCTATTTTCCATCAAAGCGTTCTGACAAATGGTTAAAAGTCAAGCGAGATTATGTGGATGGATTAAATGATACCCTTGATTTAGTACCGATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTGTGGCGTGTTTCAATCCTGAAACAGAGGAGTACCAAAGTGTATGTCGAGTGATGTCTGGATTCTCAGATTCATTTTATATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTCTTGTCCAAAAAACCGCCATATTATCAAACAGGAGAGGTACCAGACATTTGGTTTTGTCCACAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCAATTGGTTTAGTTCATCCATCTCGTGGCATTTCAATCAGATTTCCGAGATTTATTTGCTGTGTCTCAGACAGAAACCCAGAAGATTGTAGCACAGCTTCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACGGCTAAATAG 4197 0.4422 MDSETLDSTQLYLTALTTLQQPPPPPSAALPPLPSSVPHSKLIPHTRFLVDAFRHAGPHSHSYFLSHFHSDHYTGLSASWSRGVIYCSATTASLLRHILHVPAALVVPLPLRQPLLIDGVQVSLLDANHCPGAVQFLFALPCADGTAALRYVHTGDFRFSPSMVSEPALASFVGADAVFLDTTYCNPKFVFPSQDESIDYVASVVERIERECGDSNDKVLFLVATYVIGKEKILLELARRFKRKIHVDAKKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKEVMAERGGSYSRVVGFVPTGWTYEVKRGRFAVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHADRIRKHFAGLVDETANKHEFLRGFCRAPGEEGFKAEKGVSDALEPSQGMDKEKVIPLEEIEGNKSVGLPSFMGDTCTQDPTLLNDEEKEKIIRELSFCLPKWVTRVQMLDMISISGSNVVELVSNFYERETEFHEQVISCQTPVSTSKCCTINDTDSLVKPSLNNTNRTCENIDIFPSQDSKSTILGRKVSSPISPAKSPAKRKRSNDSKLNKKGKVKAKSEPSGSKQSTLTRFFSKVTPEMPGGTQSDNSEPKLDQSSEVVDLLPTDVGQIYKDEIDQFLQIINGNESLKNHAMTIIKKTKGDVNKALDIYYCNSGNLSENENELSVIEESTIDRPLVTKHASEGLRVTPDMSGQKVLKDNVDATQLSLPPEKYSPKEHACWTDGQPAPYLHIARTFNLLEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQEFRQTQRLLAPPTPLLIKDVFSALQKISVQTGSGSTSRKKGIIVHLMHSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSSPTFHQGGTAENLKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDETTSRFPDLIDIIKESSKPVASTFIMDVEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTAESIKVAICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYAEKPGYFEYAKETTIEADDACLACEATLTKINAFLEDALRSSCEGIMVKTLDVEAGYFPSKRSDKWLKVKRDYVDGLNDTLDLVPIGAWHGNGRKAGWYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYQTGEVPDIWFCPQVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPEDCSTASDIVEMFHSQTRKMDVTAK* 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0094 1398 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 3 773 - -
Pvu8g0094 1398 Pfam DNA ligase N terminus 770 946 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu8g0094 1398 MobiDBLite consensus disorder prediction 569 613 - -
Pvu8g0094 1398 Gene3D - 43 368 IPR036866 -
Pvu8g0094 1398 Gene3D - 747 1018 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu8g0094 1398 Gene3D - 1241 1397 IPR012340 -
Pvu8g0094 1398 Gene3D - 1027 1240 - -
Pvu8g0094 1398 PANTHER DNA LIGASE 3 773 - -
Pvu8g0094 1398 SUPERFAMILY Metallo-hydrolase/oxidoreductase 46 369 IPR036866 -
Pvu8g0094 1398 Gene3D - 190 346 - -
Pvu8g0094 1398 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 972 1238 - -
Pvu8g0094 1398 SUPERFAMILY Nucleic acid-binding proteins 1245 1389 IPR012340 -
Pvu8g0094 1398 MobiDBLite consensus disorder prediction 581 601 - -
Pvu8g0094 1398 CDD Adenylation_DNA_ligase_I_Euk 1007 1239 - -
Pvu8g0094 1398 ProSiteProfiles ATP-dependent DNA ligase family profile. 1127 1274 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pvu8g0094 1398 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 828 1386 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pvu8g0094 1398 Pfam ATP dependent DNA ligase domain 1016 1236 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pvu8g0094 1398 CDD OBF_DNA_ligase_I 1245 1388 - -
Pvu8g0094 1398 Pfam ATP dependent DNA ligase C terminal region 1262 1367 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pvu8g0094 1398 Gene3D DNA ligase/mRNA capping enzyme 1045 1176 - -
Pvu8g0094 1398 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1040 1048 IPR016059 GO:0003909
Pvu8g0094 1398 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 750 999 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu8g0094 1398 MobiDBLite consensus disorder prediction 618 637 - -
Pvu8g0094 1398 CDD SNM1A-1C-like_MBL-fold 36 187 - -
Pvu8g0094 1398 Pfam DNA repair metallo-beta-lactamase 264 369 IPR011084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0094 Pvu-Chr8 886949 900425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0094 697 1389 Core DNA Replication Machinery Family AT1G08130 36.963 3.47e-162 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0094 - - gmx:100807673 2342.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0094 8 886949 900425 Pvu8g0094 8 886949 900425 ECH