Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0080 ATGAAACCTAAGCTTATTCTTCACCCTTCCTTCATCTTTGTCTTCTTCCTCGTCTCAACCAATACTCCAACGTATCTTTGTGAGGATGATGCTCACTACACCAACTGTGGTAGCGCTTTTACATGCGGAAATACCAACCTAGACCTCAGGTACCCCTTCTCGGGAGGAAACAGAGATAGTTATTGTGGAACAGAGAAGCTGACATGCGAAGCAGGAGTCCCCAAGATAACCATCAATGGCATCAAGTACCGTATTCTTGATTGGAAAAATACAACACAGACACTTACAATGGCCAGGGATGATTATTGGGATGGTATCTGTGTGAGTGACTACAAGAACAACACGTTTGGTAACACTCTGTTTCAATATGATCATCAAGATAATGACCTTGGTGACGTCAATCTGTTTTACTGCCCTTCCAATTCACCTTCCCTTACACTACCGACGGCGGAGTTTGGTATTGATATATGTCAGGCTCAACATGTGTACTCCACCCTCGTACCTGTACCTTCGTACACGGGGAATTGCAAGGTTGTGGTGATTCCGATATTTCTAACCAGAGCTTCCCTTGTAAGTGAGAACAAAACGAGCGAAGCGTTACGGTTTGGTTTTGATTTGAAATGGATGGGAGATTACGGGGAGTGCCAGAAATGCAGTGATTCTGGTGGAGAGTGTGGGGTTGATGTTGGAGATGGAGAATTCCAATGTTTCTGTGTTGATGGACCACGTTCTGCTTCATGCACAGGCAAAAGCAACAATGTAGGTTTAATAATAGGCGCTACTGTAGGAGGAGTTGCAGTCCTTGTTGTCATTCTTGGATGTGGGTACTTTATGGTACAAAGAAGAAGAAAAATTTATAATAAATCAAGAAGTATGGAGCTCTTCATAGCTCCAACTTCAAGTGGAGACACTTTTGCATCCACCACCAATACGTCTCAGAGTCTATCTTCTTACCAATCTTCCAAGTCTGATCCAGTAGCCAGGAGTTACTACTTTGGTGTCCAGGTCTTCACCTATGAGGAACTGGAGGAAGCTACCAAAAACTTTGATGCTTCTAGAGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAAAGGTAAACTCAAAGATGGACGTATAGTTGCAGTGAAACGTCATTATGAAATAAACTCTAGGCGTATTACGCTGTTCTTGAATGAAGTTCAGATTCTAGCACGCTTAAGGCACAAGAACCTTGTGACACTCTTTGGATGCACCTCTAAACATAGCAGAGAGCTTCTCCTTGTTTATGAATTCATACCTAATGGAACAGTATCTTATCATCTTCAAGGAAGAAGCTCAAAATCAACTTTACTCCCTTGGCCTATAAGATTGAACATTGCTCTTGAAACAGCTGAGGCTCTAGCCTACCTACATGCAAATGATGTCGTACACCGTGATGTTAAAACCAACAACCTTCTCTTGGATGATCAATTTCTCGTCAAGGTTGCTGATTTTGGTCTCTCAAAGGAATTCCCAGATAATTTAATGACTCATGTGTCAACAGTTCCACAGGGAACACCTGGTTATGTTGACCCTGAGTATCATCAGTGCTACCAACTCACTTACAAAAGTGATGTTTACAGCTTTGGAGTGGTTTTGGTTGAGCTCATATCATCATTGCAAGCTGTGGACATCAACAGGAACCGCAGTGATGTGAACTTGGCAAACATGTTTGTCAAGAGAATTCAAAACCAGGAGCTGCATGAGTTGATTGATCCTTGTCTTGGGTTTGAGAAGGATGATGCTACAAGGAGGATGATAACAGCAGTGGCAGAATTGGCCTTTAGGTGTCTGCAACAGGAAAGAGATATGAGACCATCCATGAATGAGGTGGTGGAGATCTTAAGAGGAATCAAGAGAGGTGGGGTTGGTGCAGGGGAAGAGACAGAAATATTGGATATTAGGACTGATGAAGTTATACTTTTGAAGAAGGCTCATTCCCCGGTTTCACCAGATTCAGTTGTTGAAAATTGGGTTAGTGGCTCCTCTGTATCTAACTCCTCATAG 2028 0.4275 MKPKLILHPSFIFVFFLVSTNTPTYLCEDDAHYTNCGSAFTCGNTNLDLRYPFSGGNRDSYCGTEKLTCEAGVPKITINGIKYRILDWKNTTQTLTMARDDYWDGICVSDYKNNTFGNTLFQYDHQDNDLGDVNLFYCPSNSPSLTLPTAEFGIDICQAQHVYSTLVPVPSYTGNCKVVVIPIFLTRASLVSENKTSEALRFGFDLKWMGDYGECQKCSDSGGECGVDVGDGEFQCFCVDGPRSASCTGKSNNVGLIIGATVGGVAVLVVILGCGYFMVQRRRKIYNKSRSMELFIAPTSSGDTFASTTNTSQSLSSYQSSKSDPVARSYYFGVQVFTYEELEEATKNFDASRELGEGGFGTVYKGKLKDGRIVAVKRHYEINSRRITLFLNEVQILARLRHKNLVTLFGCTSKHSRELLLVYEFIPNGTVSYHLQGRSSKSTLLPWPIRLNIALETAEALAYLHANDVVHRDVKTNNLLLDDQFLVKVADFGLSKEFPDNLMTHVSTVPQGTPGYVDPEYHQCYQLTYKSDVYSFGVVLVELISSLQAVDINRNRSDVNLANMFVKRIQNQELHELIDPCLGFEKDDATRRMITAVAELAFRCLQQERDMRPSMNEVVEILRGIKRGGVGAGEETEILDIRTDEVILLKKAHSPVSPDSVVENWVSGSSVSNSS* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0080 675 SMART serkin_6 349 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g0080 675 Pfam Wall-associated receptor kinase galacturonan-binding 36 98 IPR025287 GO:0030247
Pvu8g0080 675 Gene3D Phosphorylase Kinase; domain 1 320 425 - -
Pvu8g0080 675 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Pvu8g0080 675 Pfam Wall-associated receptor kinase C-terminal 173 241 IPR032872 -
Pvu8g0080 675 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g0080 675 Pfam Protein kinase domain 351 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g0080 675 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 11 675 - -
Pvu8g0080 675 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 675 IPR044652 -
Pvu8g0080 675 SUPERFAMILY Protein kinase-like (PK-like) 325 624 IPR011009 -
Pvu8g0080 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Pvu8g0080 675 Gene3D Transferase(Phosphotransferase) domain 1 426 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0080 Pvu-Chr8 802397 810307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0080 40 675 Receptor kinase-like Gene Family AT1G25390 41.033 1.72e-141 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pvu8g0080 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0080 - - gmx:100811407 734.947