Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0066 ATGAGTGTTCGGTCCAAAAACTTGAGCTCAGTATTCTATGCAGATTCGTACCATCCGATTCAAGCTGGCAGCATCGACGGCACCGATGTTGTTCCTCACGACAATGCCGTTTATCGTGCTCAACTCTGTTCCTCCATTGGCCTCTATGACCCACATGGTGATCCTAAGGCCACGGGAGACCCTTATTGCACTCTCTTCGTTGCTCGTCTCTCTCGCCTCACCACACAAGATACTCTCCACAAAGTTATGAGTAAGTATGGCCAGGTGAAGAACTTGCGCTTGGTCAGGGACATTGTGACAGGAGATTCTCGTGGTTATGCTTTTGTTGAATATGAAACTGAAAGGGAGATGCGACGAGCATATATGGATGCTCATCATTTGATTGTTGATGATTGTGAAATCATAGTTGATTACAACAGACAGCAATTGATGCCTGGATGGATTCCTAGAAGGTTAGGTGGTGGTCTTAGTGGTAAGAAGGAATCAGGGCAACTTCGTTTTGGGGGAAGAGAAAAACCATTTCGTGCGCCCTTGAAATCAATCCCATATGAGGAGTTGAAGAAGCTTGGCATACCCCCTCCACCTGAAGGAAGATACATGTCACGCTTTCAGGTTCCATCGCCTCCTAGAAGAGAAAGGAGCCTTTCAGACAGGGAAGAAGACTCTCATAGACATAGAAGGGGATCCGAGGACAGATACAGGAAGGAAAATGCCCTCAGAAGTTCAGTGGACATCAAGGAAGAGCACTACAAAAGGAGTTCAAGACACCGAGATGATGATCACTCCCGTGGAAGGAGCTCATCAGAGAGGAGTGGTCGTTACCATGAGAGGAGTTCATCCGAGAAAGAACATCTTCACCGGAGATATACAGACAAAGACAACAGAAGTTCATCTGAGAAAGGACATAGACACAGAAGTTCTACTGACAAAGACAAACATTCTCGGAAGAGAAAAGAAAGAGATGAACGGTCTCAAACGCAGGGAAAATACAGTCGCCATTCCCCTCACGAGGACTAA 1017 0.4631 MSVRSKNLSSVFYADSYHPIQAGSIDGTDVVPHDNAVYRAQLCSSIGLYDPHGDPKATGDPYCTLFVARLSRLTTQDTLHKVMSKYGQVKNLRLVRDIVTGDSRGYAFVEYETEREMRRAYMDAHHLIVDDCEIIVDYNRQQLMPGWIPRRLGGGLSGKKESGQLRFGGREKPFRAPLKSIPYEELKKLGIPPPPEGRYMSRFQVPSPPRRERSLSDREEDSHRHRRGSEDRYRKENALRSSVDIKEEHYKRSSRHRDDDHSRGRSSSERSGRYHERSSSEKEHLHRRYTDKDNRSSSEKGHRHRSSTDKDKHSRKRKERDERSQTQGKYSRHSPHED* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0066 338 MobiDBLite consensus disorder prediction 211 338 - -
Pvu8g0066 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Pvu8g0066 338 Gene3D - 50 171 IPR012677 -
Pvu8g0066 338 CDD RRM_snRNP35 60 152 IPR034146 -
Pvu8g0066 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Pvu8g0066 338 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEIN 7 265 - -
Pvu8g0066 338 SUPERFAMILY RNA-binding domain, RBD 49 169 IPR035979 GO:0003676
Pvu8g0066 338 MobiDBLite consensus disorder prediction 185 338 - -
Pvu8g0066 338 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 7 265 - -
Pvu8g0066 338 SMART rrm1_1 64 137 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0066 Pvu-Chr8 708693 715020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0066 65 136 Eukaryotic Initiation Factors Gene Family AT2G23350 31.944 9.31e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0066 K13155 - gmx:100814109 531.946