Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0025 ATGCCGGAGCTTCGTAGTGGACCGCGACGACGTCGTGCTCCGGTTGGTCGTAGAAGCTCGGAACCACCGTCTTCGGGGGGGAGATACGTCAAGACTCGCGCTGCAGTTGCCAGGGAAGCGGCGGCGGCGGAGAGGCCGAGGACTCGTTTGGCGGCGAAGCAATCAGAAGAGGAGAAGCCGGTCATTGTTATATCCGATCATACGAAGAAGGAAGTTGAAGGCGGCGCGATGGCGGATGAGAGTGGTGGGCTGAGTGCAAACAAGGGTGCTGCGCCAGAAGATGATGCTAACCCAGCTCCTTTCCCTGATAGGGTTCAAGTAGGAGGGTCGCCTGTCTACAAAGTGGATAGGAAACTCGGCAAAGGAGGATTTGGACAGGTTTTTGTTGGCCGGCGAGTAACCGGTGGTAACGATCGTACCGCTGGTCCTGGTGCCACTGAGGTGGCTTTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAACTATGGCCCCCCTTACGAGTGGCAAGTGTACAACACCCTTGGTGGCAGTCATGGAATACCTAAAGTACACTATAAGGGGAGGCAAGGAGAATATTACGTAATGGTTATGGACATGCTTGGTCCCAGCTTGTGGGATGTTTGGAATTCCTCAAGTCAGGCGATGTCTGCAGAAATGGTTTCCTGCATTGCAGTGGAGTCCCTGTCAATCTTGGAGAAGATGCACTCTAGAGGCTATGTGCATGGTGATGTAAAACCGGAGAACTTTTTACTAGGTCAGCCGTCTACTCCACAAGAAAAAAAACTGTATCTTGTAGACCTGGGATTAGCTACGAAGTGGAGAGACACCTCCAGTGGGCTGCATGTTGAATATGATCAACGTCCTGATATGTTTAGAGGGACTGTACGATATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGACGATCTTGAATCTCTTGCGTATACACTCATTTTCCTTCATAAAGGCAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGTTTCTGCCCAGCTCCTTTTAGGCAGTTCCTTGAGGTTGTAGTGAACATGAAATTTGATGAAGAACCTAACTATTCTAAGTTAATTTCTTTGTTTGATGGTATGCTTGGACCAAATCCTGCATTGAGGCCAATTAACACTGAAGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAATATTGAGGAAGAAGATGATTCACAGCCAAAAAAGAAGGTCCGTTTGGGGGTTCCTGCTACACAATGGATTTCGGTTTACAATGCAAGACAGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGCAAGATTAGCACAACATGTGGAGAGAGGGATTGCGGATGGCCTCCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCTCTTATTATGGATGCTGGAACTGGTTTTTCCAGTCAAGTTTATAAGTTGTCACCGTTTTTCTTACATAAGGAATGGATCATGGAGCAGTGGGAAAAAAACTTTTACATTACTTCTATTGCAGGAGCTAATAATGGGAGCTCTCTTGTTGTGATGTCAAAAGGCACACACTATACACAACAATCATACAAAGTAAGTGATTCATTCCCATTCAAATGGATAAACAAAAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATTCTGGATACACTGATCAGGTTATTGAACTTGATTTTCTCTATCCTAGTGAGGGAATCCACAGAAGATGGGATAATGGTTATAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTGATACTGAGCATTCCTAGGCGCAGGCCAGGTGATGAAACCCAGGAAACTCTGCGCACATCCCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGACGCACAGTATGCTGA 2028 0.4625 MPELRSGPRRRRAPVGRRSSEPPSSGGRYVKTRAAVAREAAAAERPRTRLAAKQSEEEKPVIVISDHTKKEVEGGAMADESGGLSANKGAAPEDDANPAPFPDRVQVGGSPVYKVDRKLGKGGFGQVFVGRRVTGGNDRTAGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPSTPQEKKLYLVDLGLATKWRDTSSGLHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEVVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARQPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNFYITSIAGANNGSSLVVMSKGTHYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNSGYTDQVIELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0025 675 CDD STKc_CK1 113 388 - -
Pvu8g0025 675 PANTHER CASEIN KINASE-RELATED 71 646 - -
Pvu8g0025 675 ProSiteProfiles Protein kinase domain profile. 113 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g0025 675 MobiDBLite consensus disorder prediction 38 76 - -
Pvu8g0025 675 Gene3D Transferase(Phosphotransferase) domain 1 86 434 - -
Pvu8g0025 675 Pfam Protein kinase domain 113 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g0025 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Pvu8g0025 675 MobiDBLite consensus disorder prediction 1 17 - -
Pvu8g0025 675 MobiDBLite consensus disorder prediction 1 108 - -
Pvu8g0025 675 SUPERFAMILY Protein kinase-like (PK-like) 113 396 IPR011009 -
Pvu8g0025 675 SMART serkin_6 113 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g0025 675 ProSitePatterns Protein kinases ATP-binding region signature. 119 151 IPR017441 GO:0005524
Pvu8g0025 675 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 71 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0025 Pvu-Chr8 310080 319986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0025 113 270 EF-hand Containing Proteins AT4G36070 28.313 3.72e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Pvu8g0025 Pkinase 1.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0025 - - gmx:100819969 1268.83