LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g0001	ATGTCTAAGGATGTGAATATGCTAATTGATGGGGCAACAAATAAGTCTGTTGATTGTAGTGATGCATTTAACACTACAGAGGTTTTTCCTTCTCGAGATGCAATGTTAAATTGGGCTCGAGATGTTGCAAAAGAGAATGGATTTGTCCTTATTATTTTGAGATCAGAGACATCTACAAAACCTACAAGAACTACAAGGCGTAATCAAAGGAAGACATTTATAATTTTGGGTTGCGATAGAAGTGGAAAATATAGAGGACCATACAAGAATGCATTATCCCGAAAGGTAAATGGTACTAGAAAATGTGAGTGTCCCTTCAGGTTAAGGGGAAAAGCTTTGAAAAAGGCTGAAGGATGGATTGTTAAGGTAATGTGTGGTTGTCACAATCATGACTTAGAGGAAACATTAGCAGGTCATCCATATGCAGGCCGGTTGAGTGCTGAAGAGAAGTCTTTGGTTGATGATATGACAAAGAACATGATGAAGCCAAAAGATATACTATTGACATTGAAAGATTATAACATGGATAATGTCACTACTATCAAGCAGATTTACAATGCTCGACAGGCTTATCGATCCTCTCAAAAAGGTTTAGAAATGCAATACCTACTGAAATTATTGGAACGTGAGCGGTATGTGTATTGGCATAGAAAGGTGGATGACTCCAATGTTATCAGAGATATATTCTGGACACATCCAGATGCCATTAAACTTCTGGGTGCTTTCAACACTGTCTTGATAATTGATAGTATTTATACAACCACTAGGTATCCATTGCCACTGCTTGAGATTGTTGGCATTACTTCAACAGAGTTAACATTCTCTGTGGCATTTGCTTTTGTGGAGTCTGAGCGAGCTGACAACTTCACTTGGGTACTACAGAAGTTAAGAGGATTGATTGTTAAAGATGAAGACATACCTCAGGTGATTGTGACTGACAGAGACATTTCTTTGATGAATGCAGTGCAAGTTGTCTTTCCAAGCTCTTCTAATTTGTTATGTCGGATTCATATCAACAAGAATGTGAAGGCCAAATGCATGTCGATAGTCCATCCAAAGGAGAAACAAGACTTGGTGATGGATGCATGGGATGTTGTTGTGAATTCTTCTAATGAGAATGAATATATCCAGCGTCTGGCATTATTTGAAAAAGTTTGCTCAGGTTTTCCTAGTTTTTGTGAATATGTGAAAAAGATGTGGCTGATCCCACACAAGGAAAAGTTTGTCACTTCATGGACAAATCAGGTGATGCATTTGGGTAACACGACAACGAATAGGGTTGAGGCAACAAATTGTAAGTTAAAGAATTTGCTTCAAGATAGCAAAACTGATATGTGTAGTTATTGGGATGCTATGAATGACATGATTACTTTGCAACACACAGAGATTAAGTCGTCATTTGAGAAAAGCATAAATGTAGTGGATCATATGCAAAATACTCCAGTATACATCAAACTGCAAGGATTTGTATCAAGGAGTGCATTGAGTCATATAACTGACGAGTATGATCGAGTTAAGACTGTTGGTACTGATAGTTCTAAATGTTGTTGCATAGTTAGAACTACACATGGTCTTCCTTGTGCATGTGAACTTGCTAGTTACAGTACTATGTGCCATCCTATTCCCTTGGAGGCAATTCATGTTCATTGGAAGAAGTTAAACTTTATTGATCGAGGAATGGATGACAAGGAGTTTGAGTTGTCATTGCAACCTGAGTTGGATGCTTTGCTCCAGAGATTTCAGGAACTTGATTGTGCTGGGAAAATTATTCTAAAGGCTAAATTGCATGAACTAGCATTTCCTGATACAGCTTCAAAGTGTCCAACTCCTAAAATGGTAAGAATAAAGCGTGCTCCAGGGTCAAAAAGAGATAGATCAATTCATTGTGATCTTTCACATCGGGAGCATGTTGATGCAATGCATCCTACCCATAGTGGCACTTCATCTTGCCCTTCCTCTCATCAAATAGTCCACGAGTCTAAACGAAGAAGAGTTCTGCCAATGATGGACCAATTTCCGATTCAGATCCATCCGTTTATTGAAGAAATTATCGATGTGAAAGCGGATTCAAATTGTGGTTATCGTGCTGTTGCTGCTCAACTTGGTATGGGTGAGGAATCATGGGCTTTAGTTCGTCAGGATTTGATTAGAGAGCTTCAACAGTGGCAAGATATTTACGCCAAACTCTTTGGTAGCAATGAACGAGTGGCTGAACTGAGGCAATCTTTGTATGTTGACAAGGAGACATCTATTAAAAAGTGGATGACCATACCAGATATGGGTTATGTAATTGCCTCAAGATATAACGTTGTTCTAGTCTCTTTATCCTTGAAGGAGTCCATGACATTTTTCCCTCTTAGAGGACGACCACCATTATCTCAGTCAAGGCACCGCCTTATTGCCATTGGGTTGGTGCATGATTGTCACTTTGTACAGGTTGCTTTGAAGGCTGAGTCTGCATTACCTCCCACTGCTTTGCAATGGTCGAGATACTGCAGTGCTGAATCTCGTTCTTGGGAAACTTCATATGTTAATCGTATGGAACATTTTAGGTCATTGTTTCCACACACAAAAATAATTATGTAA	2586	0.3898	MSKDVNMLIDGATNKSVDCSDAFNTTEVFPSRDAMLNWARDVAKENGFVLIILRSETSTKPTRTTRRNQRKTFIILGCDRSGKYRGPYKNALSRKVNGTRKCECPFRLRGKALKKAEGWIVKVMCGCHNHDLEETLAGHPYAGRLSAEEKSLVDDMTKNMMKPKDILLTLKDYNMDNVTTIKQIYNARQAYRSSQKGLEMQYLLKLLERERYVYWHRKVDDSNVIRDIFWTHPDAIKLLGAFNTVLIIDSIYTTTRYPLPLLEIVGITSTELTFSVAFAFVESERADNFTWVLQKLRGLIVKDEDIPQVIVTDRDISLMNAVQVVFPSSSNLLCRIHINKNVKAKCMSIVHPKEKQDLVMDAWDVVVNSSNENEYIQRLALFEKVCSGFPSFCEYVKKMWLIPHKEKFVTSWTNQVMHLGNTTTNRVEATNCKLKNLLQDSKTDMCSYWDAMNDMITLQHTEIKSSFEKSINVVDHMQNTPVYIKLQGFVSRSALSHITDEYDRVKTVGTDSSKCCCIVRTTHGLPCACELASYSTMCHPIPLEAIHVHWKKLNFIDRGMDDKEFELSLQPELDALLQRFQELDCAGKIILKAKLHELAFPDTASKCPTPKMVRIKRAPGSKRDRSIHCDLSHREHVDAMHPTHSGTSSCPSSHQIVHESKRRRVLPMMDQFPIQIHPFIEEIIDVKADSNCGYRAVAAQLGMGEESWALVRQDLIRELQQWQDIYAKLFGSNERVAELRQSLYVDKETSIKKWMTIPDMGYVIASRYNVVLVSLSLKESMTFFPLRGRPPLSQSRHRLIAIGLVHDCHFVQVALKAESALPPTALQWSRYCSAESRSWETSYVNRMEHFRSLFPHTKIIM*	862

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g0001	861	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	78	526	IPR031052	GO:0006355
	Pvu8g0001	861	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1	78	526	-	-
	Pvu8g0001	861	ProSiteProfiles	OTU domain profile.	681	816	IPR003323	-
	Pvu8g0001	861	Pfam	MULE transposase domain	245	341	IPR018289	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g0001	Pvu-Chr8	128926	132761	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Pvu8g0001		MULE	1.2e-21	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g0001	-		-	gmx:100805365	1407.89