Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2886 ATGGTATTTGAGAGTGATCTGAACCTGAAGGCAACAGAACTTCGATTGGGGTTGCCAGGGACAGAGGAAAAGGAAGACAAAAACCTGCATGCACATGTTGTTGTTAGAAACAACAAAAGGCAAGTGCGTGAAACTTCTCAAGACTCTGTTTCCATCTCCAAGGCCTCACATCACCAACAACGTGTGGACACTCTTTCAGCCCCTCCACCCAAGGCAAAGATAGTGGGGTGGCCTCCAATCAGATCCTACAGGAAGAACAGTGTGCAGGAGGGTGAGGGGGATGGGATCTATGTGAAAGTGAGCATGGATGGAGCACCTTATCTCAGAAAGATTGATTTGAAAGTCTACAGGGGCTATCCAGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGGCTATAGGTGACTACTCTGAAAGAGAGGGTTATAAGGGGTCTGAATATGCTCCTACATATGAGGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGTGATTTCTTGCAAAAGGCTAAGAATCATGAAAGGCTCGGAAGCAAGAGGGCTGGGTTGTGGTGTATGA 579 0.4629 MVFESDLNLKATELRLGLPGTEEKEDKNLHAHVVVRNNKRQVRETSQDSVSISKASHHQQRVDTLSAPPPKAKIVGWPPIRSYRKNSVQEGEGDGIYVKVSMDGAPYLRKIDLKVYRGYPELLKALETMFKLAIGDYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVISCKRLRIMKGSEARGLGCGV* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2886 192 ProSiteProfiles PB1 domain profile. 95 182 IPR000270 GO:0005515
Pvu7g2886 192 Gene3D - 90 192 - -
Pvu7g2886 192 SUPERFAMILY CAD & PB1 domains 85 181 - -
Pvu7g2886 192 MobiDBLite consensus disorder prediction 40 68 - -
Pvu7g2886 192 PANTHER AUXIN-INDUCED PROTEIN 6 189 - -
Pvu7g2886 192 Pfam AUX/IAA family 12 189 IPR033389 -
Pvu7g2886 192 MobiDBLite consensus disorder prediction 44 63 - -
Pvu7g2886 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 189 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2886 Pvu-Chr7 51677904 51679767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2886 98 188 B3 DNA Binding Superfamily AT2G46530 37.363 6.01e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu7g2886 AUX_IAA 1.4e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2886 K14484 - gmx:100800212 316.62