Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2822 ATGGCAGATCTTTCTAGCTATGGAAGTTCTGAGCGTGATGAGCAAGCGTTCATTACATTAAAGAAGGGCACTCAGTTAGTAAAGTATAGTCGAAAAGGGAAGCCGAAATTTTGTTCCTTCAGACTCTCATCGGATGAAACAAAACTGATTTGGATTTCTCATGGAAAGGAAAAGAATCTAAAATTAGCTTATGTTTCACACATCCTCCCTGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGTCCTGAAAAGGATTATCTGTCATTTTCACTGATTTATAAGAAGGGGGAACGATCACTTGATCTGATCTGCAAGGACCAAGCAGAGGTAGAGATATGGTTTTCAAGCCTCAAGGCATTAATTTCCACTGGACAGCCTATTAGGCGTGGAATAAGTGATTTAAGCAATGATAGTGTTGACTTTGTTGCTGGAACACTAGAGTTAGCATCAAGCATTGGCCGTAGCAGGTTTTCTTTTGAATCAGTATCTCATGAATCTACAACGTCTTGGTCCAGATCCGATACAAATATGCCTCTGAGGACAAGTGTTGGAGATGGTTCTCGTATTAGTATATCAAGTATTAGCCACTCAAGTAGTGTGGGGTCAGGAATAGATGACATAGAATCTCTTGGTGATGTTTTTATATGGGGAGAGGTTTGGGGAGATGGCAGTTCATCTGATGGATTGGGGAGTCAAACTACTGGTAAGATTGATGTGTTGATTCCTAAGCCATTAGAATCTGATGTTGTTCTTGATGTTAATCAGATCGGGCCCGGTGTTCGTCACATTGCTTTAGTTACAAGGCAAGGTGAGGTTTTTACATGGGGAGAGGACTCTTGTGGAAGGCTCGGACATGGCTGTGAAAAAGATTTTGGTCGACCTCATCTTGTTGAGTCCCTAGCAATTACCAACGTGACTTTTGTTGCATGTGGTGAATATCATTCATGTGCCGTGTCTCTATCTGGTGACTTGTTCACCTGGGGTGATGCTACAACTTGTGCAGGACTTCTTGGTCATGGCAGTGATGCTAGCTACTGGGTACCAAAGAGGGTGTGTGGCCCTTTAGAGGGACATCAGGTTGTATCCGTAGCATGTGGCGCATGGCATTCAGCATTAGCAACCTCCCATGGGAAATTGTTCACCTTTGGTGATGGAAGATTTGGTGTATTAGGCCATGGAGATCGAGAGTGTGTATCATATCCAAAGCAGGTACAATTATTGAGTGGACACAAGGCTATTAAGGTTGCATGTGGAATGTGGCATTCAGCAGCTATCATAGAGATTATGGACTCTTCTGCTTCAAACCTTTCATCCAAGAAGATCTTCACATGGGGTGATGGTGACCAGTATCGTTTGGGTCATGTCAACAAGGAAAACTACCTTCAACCAACTTGTGTAGCTGCCCTTGCTGATTATAGTTTTATCCAGATTGCATGTGGCTACACTATGACTGTTGCACTCACTGTATCTGGTCATGTTTTTACAATGGGAGGCACTGCATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTCCCAGTTCTAGTCCGAGATAAGTTGGTAGGTGAATTCGTGGAGGAAATAGCATGCGGAGCAAATCATGTTGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGTAGAGGTGCCAATGGAAGACTTGGACATGGAGACACAGAAGACCAGAAAACTCCAACCTTGGTCGAAGGCTTGAAAGACAGACATGTTAGGAATATCTCATGTGGCTCTACCTTTACATGTTGCATATGCTTACATAAATGGCTATCTGGTGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTTACCCGGAAAAGGCATAATTGCTATCATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAGGCTTCCAAAGCAGCATTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTTCTGATAATGCTTCAACTTTAACTAAAGAAATTAGTCGTCCTGCAAGTTCTGTATATGGAAGGGACAAATTTGAGCGGGGAGAGGTCAAGTCTTCCAGAGTTCTCTTGCCTCCCATCACAGAACCAATAAAGTATCTTGAGATTAGGAATACTAAGCATGGAAATATAGATGACACTTCTTCCATTGTCCGAGCATCTCAAATTCCTACGACTTTGCAATTGAAAGATATTGCATTTCCAATTTCGCTGAGTTCTGCACAGAATTTTTTCAAGCCTCTTATGCAGCCAACTCAACCTCAACCTCCACCTCCACTAACTCCAAGAATTATCTCACCATATGCTCAAAAAAGACCACCAAGCCCACCTCGTTCTACCTCCCCTGGATTTTCAAAAGGCCTTATTGATAATTTAAAGAAGAAAAATGATCATATCAATCAAGAAGTCTCAAAATTGCAAAACAAGAATAAATGTTTGAAGCAGAAGAATGACACACAAGAAATGACGATTCAGGAGCTTCAGAAAATTATTGAAGAGGAATCTTCTAAGCTTAGAGAAGCAAAGTATTTTATTAAGTCCATGACAGATAAGTTGAGGGAAGTGATTGAGACTTTGCAATCTGAGATTCCTGACAATGATACTTTGAGGACCATGCATGCTCAAGCTGAAGAATTTCTTAATGAAGAAAAACATTTGGAACCTTCTTCCTCCTCACTGAGCCTAGAGTCTGAGCCACAAAACTCTTTAAAGCTAGAAGGGCGAAGAATGGAAGGAAATGATGATGCTTCTGGGGTTGTTCCATCCCCAGATGAAGAAAAAACTTGTGAAGAAATCAGCAACTCATCTACATCTAGTACAGTAGTGATTCCAGCAACCTCAAGAAAATTTTCAAGATTAAGGGACCCTAGTATACATGTGACAGAAGGAGAAAGATCAGTCATTGAACAATTTGAGTCAGGTGTTTATGTCACCCTCGTTGTACTACCTAGTGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAAAGAAGATTCAATGAACAAGAAGCAGAAGAATGGTGGAGCCAAAACAAAGATAAGGTGTATAGTAAATACATTCCACCACCACCCACAAAAAATACAATTACTGGACCATCTCTTACCTCTCCAAATGCTGAAGAGAATAGTGAGCCATTACCTTCTTCCTAA 3174 0.4115 MADLSSYGSSERDEQAFITLKKGTQLVKYSRKGKPKFCSFRLSSDETKLIWISHGKEKNLKLAYVSHILPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEIWFSSLKALISTGQPIRRGISDLSNDSVDFVAGTLELASSIGRSRFSFESVSHESTTSWSRSDTNMPLRTSVGDGSRISISSISHSSSVGSGIDDIESLGDVFIWGEVWGDGSSSDGLGSQTTGKIDVLIPKPLESDVVLDVNQIGPGVRHIALVTRQGEVFTWGEDSCGRLGHGCEKDFGRPHLVESLAITNVTFVACGEYHSCAVSLSGDLFTWGDATTCAGLLGHGSDASYWVPKRVCGPLEGHQVVSVACGAWHSALATSHGKLFTFGDGRFGVLGHGDRECVSYPKQVQLLSGHKAIKVACGMWHSAAIIEIMDSSASNLSSKKIFTWGDGDQYRLGHVNKENYLQPTCVAALADYSFIQIACGYTMTVALTVSGHVFTMGGTAYGQLGNPNSDGKVPVLVRDKLVGEFVEEIACGANHVAVLTSRSELYTWGRGANGRLGHGDTEDQKTPTLVEGLKDRHVRNISCGSTFTCCICLHKWLSGVDQSVCSDCRQPFGFTRKRHNCYHCGLVFCHPCSSKKASKAALAPTPSKPHRVCDACYAKLKGSDNASTLTKEISRPASSVYGRDKFERGEVKSSRVLLPPITEPIKYLEIRNTKHGNIDDTSSIVRASQIPTTLQLKDIAFPISLSSAQNFFKPLMQPTQPQPPPPLTPRIISPYAQKRPPSPPRSTSPGFSKGLIDNLKKKNDHINQEVSKLQNKNKCLKQKNDTQEMTIQELQKIIEEESSKLREAKYFIKSMTDKLREVIETLQSEIPDNDTLRTMHAQAEEFLNEEKHLEPSSSSLSLESEPQNSLKLEGRRMEGNDDASGVVPSPDEEKTCEEISNSSTSSTVVIPATSRKFSRLRDPSIHVTEGERSVIEQFESGVYVTLVVLPSGYKVFKRIRFSKRRFNEQEAEEWWSQNKDKVYSKYIPPPPTKNTITGPSLTSPNAEENSEPLPSS* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2822 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 543 IPR000408 -
Pvu7g2822 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 377 IPR000408 -
Pvu7g2822 1057 Pfam FYVE zinc finger 596 661 IPR000306 GO:0046872
Pvu7g2822 1057 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 600 662 IPR017455 -
Pvu7g2822 1057 MobiDBLite consensus disorder prediction 756 795 - -
Pvu7g2822 1057 MobiDBLite consensus disorder prediction 1037 1057 - -
Pvu7g2822 1057 SMART fyve_4 595 663 IPR000306 GO:0046872
Pvu7g2822 1057 Coils Coil 797 845 - -
Pvu7g2822 1057 MobiDBLite consensus disorder prediction 758 788 - -
Pvu7g2822 1057 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1036 - -
Pvu7g2822 1057 SUPERFAMILY RCC1/BLIP-II 218 597 IPR009091 -
Pvu7g2822 1057 Gene3D - 153 333 IPR009091 -
Pvu7g2822 1057 Gene3D - 334 433 IPR009091 -
Pvu7g2822 1057 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 416 426 IPR000408 -
Pvu7g2822 1057 SUPERFAMILY PH domain-like 14 122 - -
Pvu7g2822 1057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 672 IPR013083 -
Pvu7g2822 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Pvu7g2822 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 544 595 IPR000408 -
Pvu7g2822 1057 Gene3D - 10 128 IPR011993 -
Pvu7g2822 1057 SUPERFAMILY FYVE/PHD zinc finger 596 666 IPR011011 -
Pvu7g2822 1057 CDD PH_PLC_plant-like 14 123 - -
Pvu7g2822 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 429 IPR000408 -
Pvu7g2822 1057 ProSiteProfiles BRX domain profile. 973 1028 IPR013591 -
Pvu7g2822 1057 Gene3D - 434 603 IPR009091 -
Pvu7g2822 1057 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 14 1036 - -
Pvu7g2822 1057 MobiDBLite consensus disorder prediction 1023 1057 - -
Pvu7g2822 1057 Pfam Transcription factor regulating root and shoot growth via Pin3 973 1027 IPR013591 -
Pvu7g2822 1057 PRINTS Chromosome condensation regulator RCC1 signature 273 289 IPR000408 -
Pvu7g2822 1057 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Pvu7g2822 1057 PRINTS Chromosome condensation regulator RCC1 signature 364 380 IPR000408 -
Pvu7g2822 1057 PRINTS Chromosome condensation regulator RCC1 signature 380 394 IPR000408 -
Pvu7g2822 1057 PRINTS Chromosome condensation regulator RCC1 signature 481 499 IPR000408 -
Pvu7g2822 1057 PRINTS Chromosome condensation regulator RCC1 signature 539 560 IPR000408 -
Pvu7g2822 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 271 319 IPR000408 -
Pvu7g2822 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 378 426 IPR000408 -
Pvu7g2822 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 322 373 IPR000408 -
Pvu7g2822 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 491 540 IPR000408 -
Pvu7g2822 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 442 488 IPR000408 -
Pvu7g2822 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 545 592 IPR000408 -
Pvu7g2822 1057 MobiDBLite consensus disorder prediction 915 948 - -
Pvu7g2822 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 322 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2822 Pvu-Chr7 51188911 51195995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2822 959 1028 Major Intrinsic Protein MIP AT1G31880 38.028 6.76e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2822 - - gmx:100778984 1634.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2822 7 51188911 51195995 Pvu7g2822 7 51188911 51195995 ECH