Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2808 ATGGATTTTGTAAGCCAAAGACACCTACTCCATGTACCAACACAAGCTAATTCACCTTGCACAACTCCTCCAAATCATGATATTACACATCCTTCTGGTTCAAATTTTCCCCTCTTAGCAATCCTTGTGGTAGGAATGATGTTCACAGCTTTCTTCCTTGTAGGCTACTATATGTTAGTTGTCAAGTGCTGCTTCAATTGGAACCGTGTTCATCACAGAAGCCTATTTTCTTTGTCCAGGCAAGGTGAAGATCCATCTGCTGGATATTTAACAGCATCTGAGCCAAGAGGGCTAGAGGAAGCAGTGATCAGGTTAATCCCTGTGATTCATTATAAGCCAGAAGATGGAGACACAAACTCTGGTGATTGTGCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTGGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAAAAATACTCATTGCCCCCTTTGCAGAAGAATTGTGTCCTTGACAAGCCAAGTCCTTGTTGACCAACTAAACCTTCTCTATCCAAGATCTTCCCACCAAAGCCAAAACATTGAGAACCATGTTAGTGATGAAGGTTTTGTTGTGATTGATTTGGATGGTGAACTTGGTAATAGAGAGCAGAACTTGCAAGGAAGAGAAGAGTTATTACCAACCATTGGTGTTTTGTTGGAGCAGAAGAAAGCAAAGAAGCTTCATAAGGTGAGCAGCTTGGGAGATGAGTGTATTGGCATTAGAGGGAAAGGTGAAAGGGTCTCAGTTGAAGCCATGAGAAGGTCTTTTTCCATGGATTCATCAGTGGATAGAAAGTTTTATGCAGCAATTCAACATGAGATTAACACAGTTGAAGCCTGTGGTGGCAGTGGTAGAGTGAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAATAAGTGCTGCTGTATAG 954 0.4161 MDFVSQRHLLHVPTQANSPCTTPPNHDITHPSGSNFPLLAILVVGMMFTAFFLVGYYMLVVKCCFNWNRVHHRSLFSLSRQGEDPSAGYLTASEPRGLEEAVIRLIPVIHYKPEDGDTNSGDCAVCLSEFQQDEKLRVIPNCGHVFHIDCIDVWLQKNTHCPLCRRIVSLTSQVLVDQLNLLYPRSSHQSQNIENHVSDEGFVVIDLDGELGNREQNLQGREELLPTIGVLLEQKKAKKLHKVSSLGDECIGIRGKGERVSVEAMRRSFSMDSSVDRKFYAAIQHEINTVEACGGSGRVKRSFFSFGHGSRSISAAV* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2808 317 CDD RING-H2_PA-TM-RING 122 165 - -
Pvu7g2808 317 Pfam Ring finger domain 122 165 IPR001841 -
Pvu7g2808 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 172 IPR013083 -
Pvu7g2808 317 SMART ring_2 123 164 IPR001841 -
Pvu7g2808 317 PANTHER RING-H2 FINGER PROTEIN ATL16 22 315 - -
Pvu7g2808 317 SUPERFAMILY RING/U-box 112 171 - -
Pvu7g2808 317 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Pvu7g2808 317 PANTHER RING-H2 FINGER PROTEIN ATL16 22 315 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2808 Pvu-Chr7 51098381 51099334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2808 29 307 C3H Transcription Factor Family AT1G04360 41.916 1.52e-70 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2808 - - gmx:100812364 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1659 1 41960337 41961290 Pvu7g2808 7 51098381 51099334 PCT